Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03959 GACAAGATGGCTGTTCCCTTGCTAAACAAAAAAGTTGTGAAGAAGCGTGTCAAGAAGTTTAAGAGGCCTCAAAGTGACCGCAAAATTTCCGTGAAGCCCAGCTGGCGCAGGCCAAAGGGTATTGATTCACGTGTGAGGAGAAAGTTCAAAGGATGTGTTTTGATGCCAAACATTGGTTATGGTTCAGACAAGAAGACCCGTCACTATCTGCCTAATGGATTCAAGAAGTTTGTTGTCCACAATGTCAAGGATCTTGAACTTCTGATGATGCACAACAGGACATACTGTGCTGAGATAGCACACAATGTGTCAACCAGGAAGAGAAAGGAGATTGTAGAACGTGCTGCACAGTTGGATGTTGTGGTTACCAACAAACTTGCCAGGTTGCGCAGCCAAGAAGATGAGTGA 408 0.4485 DKMAVPLLNKKVVKKRVKKFKRPQSDRKISVKPSWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVKDLELLMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVVTNKLARLRSQEDE 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03959 135 MobiDBLite consensus disorder prediction 16 36 - -
Vimu6g03959 135 Pfam Ribosomal protein L32 18 124 IPR001515 GO:0003735|GO:0005840|GO:0006412
Vimu6g03959 135 SUPERFAMILY Ribosomal protein L32e 3 133 IPR036351 -
Vimu6g03959 135 CDD Ribosomal_L32_L32e 24 124 IPR001515 GO:0003735|GO:0005840|GO:0006412
Vimu6g03959 135 PANTHER 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N 3 135 IPR001515 GO:0003735|GO:0005840|GO:0006412
Vimu6g03959 135 SMART Ribosomal_L32e_2 17 124 IPR001515 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03959 Vimu-Chr6 39196040 39196862 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03959 3 135 Cytoplasmic Ribosomal Protein Gene Family AT4G18100 87.218 1.93e-85 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03959 K02912 - qsa:O6P43_016965 250.751