Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03952 ATGGCGGATAACGGCGACGGCGACGGCGCCGAAGAGTACCTCTTCAAGGTCGTGCTGATCGGGGACTCTGCGGTCGGCAAGTCCAACCTCCTGTCGCGGTTTGCGCGGAATGAGTTCGACAGCAACTCCAAGGCCACGATTGGGGTGGAATTCCAGACGCAGGTGGTGGAAATCGACGGCAAGGAGGTCAAGGCGCAGATCTGGGACACTGCGGGCCAGGAGCGCTTCCGAGCCGTCACTTCTGCTTACTACAGAGGCGCCGTTGGAGCGCTAGTCGTCTACGATATCAGCAGGAGAGGCACCTTCGATGGCATCAAGCGTTGGCTCGAAGAGCTCACTAGTGAGTGCTTTTTATTTGTTTCCTTTGGAATTTGA 375 0.5733 MADNGDGDGAEEYLFKVVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDISRRGTFDGIKRWLEELTSECFLFVSFGI 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03952 124 PRINTS Transforming protein P21 ras signature 15 36 - -
Vimu6g03952 124 PRINTS Transforming protein P21 ras signature 38 54 - -
Vimu6g03952 124 PRINTS Transforming protein P21 ras signature 56 78 - -
Vimu6g03952 124 SMART rab_sub_5 15 124 - -
Vimu6g03952 124 SMART ras_sub_4 12 123 - -
Vimu6g03952 124 FunFam Ras related protein1 8 114 - -
Vimu6g03952 124 SMART rho_sub_3 17 123 IPR001806 GO:0003924|GO:0005525
Vimu6g03952 124 Pfam Ras family 16 116 IPR001806 GO:0003924|GO:0005525
Vimu6g03952 124 Gene3D - 6 121 IPR027417 -
Vimu6g03952 124 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 116 IPR027417 -
Vimu6g03952 124 NCBIfam small GTP-binding protein domain 13 116 IPR005225 GO:0005525
Vimu6g03952 124 ProSiteProfiles small GTPase Rab1 family profile. 10 124 - -
Vimu6g03952 124 PANTHER DRAB11-RELATED 11 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03952 Vimu-Chr6 39146396 39146770 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03952 K07976 - gmx:100808333 207.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g01528 9 24459438 24460243 Vimu6g03952 6 39146396 39146770 PCT