Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03941 ATGGAGAATATGAACACATCTTTGGATGATATTGAAATTGATCAATTACATGGCAAAGTTGCAGAAGATATAAATGAAAATCATGTTCAACCTAACTCAATCCATCCATTAGTTGGAATGGTTTTTGAAAGTGTTAATCAAGCCAAGTCATTTTATAGACAATATGCAATATCAAAGGGCTTTGGAATTCGAACAAGGAGTTCAAGGAAGAACAACAAAAACGAATTGTGTTACTTCATGATGGTGTGTTCTAGGGCTGGAAAATTTGTCGCATCCAATCCAAATGAAATGATTGGACGTCCAACACAGGCTAATGATTGTGCAGCTCGAATGATTGTATCAAAAAGAGATGAGAAGTGGTACATTTCGGCATTTGATGATGTACATACTCATGATCTTAGTCCAACAAAGTCAAGATTGTTCCGAGGCAATAAAATGATGAATCTGAATGTGAAGAGAACACTAGACTTAAATGCAGAAGCAGGAGTTAGGATTAACAAGAGTTTTCGATCCTTGGTTTGTGCTACAGGAGGTTATGAAAACATGGAGTTTGTGGAACAAGATGTTAGAAATTATGTCGCCAAACAGAGAAGAGCATTATCAAAAGATGGTGATGCCAAGGCACTCTTAAACCATTTCTCTTCCATGAGAGAATTGAATAAGGATTTCTTTCTCAACATTGATGTTGATGACGACAACCGCATATTGAATGTATTTTGGGCTGATGCACGAAGTAGGGCAGCTTGTGAGTACTTTGGTGATGTCATATCTTTTGACACGACATACTTAACAAATAAGTATGACATGCCGTTTGCTCCTTTCGTTGGCGTCAACCACCATGGTCAATCAATATTGTTAGGTTGTGGATTGTTATGCTCAGAGGACACAGATTCATTTGTTTGGCTATTTAATTCATGGCTTCGGTGCATGTCCTATAGAGCGCCCCAGGAAATTGTTACCGATCAATGCAAAGCAATGAAGAAAGCAATAGAAATCGTGTTTCCAAACAGTCTTCATAGGTGGTGCTTGTGGCATATAATGAAAAAAATACCTGAGAAGTTACAAGGCTATGCCGCTTACAAAGATATCAAGCGACAACTTAAGCAAGTTGTGTACAATTCTGATTCAGTTGACAACTTTGTTTACGGTTGGGAAAGGATGGTAACAATATTTTCACTACAAACAAACGAATGGCTCTGTTCACTTTACGAAGAGCGAAGCAGGTGGGTTCCATGTTACCTGAGAAACAATTTTTGGGCTGGCATGTCAACCACTCAAAGAAGCGAGAGTATGAATGCATTTTTTGATGGATATATTAACTCACAAACTACTCTTCAAGAATTTGTTAAACAATATGACAATGCACTACAACACAAGACAGAAAAAGAAACCCAAGCTGACTTCACATCCTTAAACACAACTCTTCCATGTGGGTCACAATCACTCATTGAGCGACAATTCCAAAAGAATTACACACATGCTAAGTTTGCAGAAATACAGTCAGAATTTAGAGGTAAAATTAATTGTTTTGTTGACGGTGTTGATGTAGAAGATAAATCATCATATTACAAGGTGACAGAGGACTCCATTCATAATGAGATAAGGGAAGAGAGGGTATTCAAGGTTACATTTGAACGAGATACAAAGAATGTGAGTTGCAGTTGTTTGCTTTTTGAGTTTAGGGGTATTATTTGTAGACATTGTGTATGTGTCCTGGCACAAGAGCGAGTAACACAACTTCCTGCTAAGTACGTACTCACAAGATGGTGTAAAAATGTCTGCAGAAAACACACATATATTAGAGCAACATACAACAACAAAGAAAAGGATCCACATATTGAACGATATGATAACTTATGCAAGACTTTTGCTGATATTGCTGAGATTGCGTGTGAGTCAACAAACATGACAGAATTATTGATTGACCACCTTAGATCATTTGTGGACCATCATAGCCTACAAATTTCACCTTCACCTACACCTTACGTCAACAACACCACTCACAAAGAACAACAACACATGCATCATACTAACGTAGCTCATGATGTAGACACAAATGCAAACAATGTTGACATCCAAAGCCCTCAAGTTGTGAAGCGAAAGGGTCGACCTAGGACAAAAAGGTTGAAATCCACATCTGAAAGACTAACAAGGAAGAAACAATGGGCAAAACGAAGTTGTCCAACATCTATTCATATTGCTTTAAGTTATTATCTTAGCTTCATCAATTGCAATAAACATTTCATGGTGTTATAA 2256 0.3746 MENMNTSLDDIEIDQLHGKVAEDINENHVQPNSIHPLVGMVFESVNQAKSFYRQYAISKGFGIRTRSSRKNNKNELCYFMMVCSRAGKFVASNPNEMIGRPTQANDCAARMIVSKRDEKWYISAFDDVHTHDLSPTKSRLFRGNKMMNLNVKRTLDLNAEAGVRINKSFRSLVCATGGYENMEFVEQDVRNYVAKQRRALSKDGDAKALLNHFSSMRELNKDFFLNIDVDDDNRILNVFWADARSRAACEYFGDVISFDTTYLTNKYDMPFAPFVGVNHHGQSILLGCGLLCSEDTDSFVWLFNSWLRCMSYRAPQEIVTDQCKAMKKAIEIVFPNSLHRWCLWHIMKKIPEKLQGYAAYKDIKRQLKQVVYNSDSVDNFVYGWERMVTIFSLQTNEWLCSLYEERSRWVPCYLRNNFWAGMSTTQRSESMNAFFDGYINSQTTLQEFVKQYDNALQHKTEKETQADFTSLNTTLPCGSQSLIERQFQKNYTHAKFAEIQSEFRGKINCFVDGVDVEDKSSYYKVTEDSIHNEIREERVFKVTFERDTKNVSCSCLLFEFRGIICRHCVCVLAQERVTQLPAKYVLTRWCKNVCRKHTYIRATYNNKEKDPHIERYDNLCKTFADIAEIACESTNMTELLIDHLRSFVDHHSLQISPSPTPYVNNTTHKEQQHMHHTNVAHDVDTNANNVDIQSPQVVKRKGRPRTKRLKSTSERLTRKKQWAKRSCPTSIHIALSYYLSFINCNKHFMVL 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03941 751 Pfam FAR1 DNA-binding domain 50 134 IPR004330 -
Vimu6g03941 751 SMART 26again6 551 578 IPR006564 GO:0008270
Vimu6g03941 751 Pfam SWIM zinc finger 552 571 IPR007527 GO:0008270
Vimu6g03941 751 ProSiteProfiles Zinc finger SWIM-type profile. 540 576 IPR007527 GO:0008270
Vimu6g03941 751 Pfam MULE transposase domain 255 349 IPR018289 -
Vimu6g03941 751 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 27 649 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03941 Vimu-Chr6 38923395 38925650 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu6g03941 MULE 8.7e-33 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03941 - - vra:106770356 1411.74