Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03936 ATGAAGTTCAACATTGCAAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCAGAAACTACGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCAGTGGAGATGCACTTGGTGAGGAGTTTAAAGGTTATGTATTCAAAATTACTGGAGGCTGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGCTGACCCCTGGTCGGGTTCGCCTGCTTCTTCATAGGGGAACTCCATGTTTCCGTGGATATGGAAGGCGTAATGGAGAGCGCAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTATCTGTGCTTAACTTGGTAATTGTGAAGAAGGGTGAAAATGACTTGCCAGGATTGACTGACGTTGAGAAGCCAAGGATGAGAGGTCCAAAGAGAGCCTCCAAAATCCGGAAACTGTTCAACCTTTCTAAAGAGGATGATGTTAGGAAGTATGTCAACACGTACCGTCGGACATTTACAACAAAAGCAGGCTATGGTCCCTTTGGGACACTGGATTATGGTCTGAATGGGTTTGAACGAATGGTTGCAGGGAAAAAGGTGAGCAAAGCTCCAAAGATTCAAAGACTAGTCACTCCTCTTACTCTCCAAAGGAAGAGGGCACGGATTGCTGATAAGAAGAAGAGAATTGCCAAGGCAAAATCAGAAGCAGCCGAGTACCAGAAACTCCTTGCCTCCAGGTTGAAGGAGCAGAGGGAACGCCGCAGTGAGAGTTTGGCCAAGAGGAGGTCCAAGCTTTCCAGTGCTACCAAGGCAGCTGTATAG 804 0.4801 MKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVSGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGYGPFGTLDYGLNGFERMVAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKLSSATKAAV 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03936 267 PIRSF RPS6e 184 267 IPR014401 GO:0003735|GO:0005840|GO:0006412
Vimu6g03936 267 PIRSF RPS6e 1 175 IPR014401 GO:0003735|GO:0005840|GO:0006412
Vimu6g03936 267 MobiDBLite consensus disorder prediction 242 257 - -
Vimu6g03936 267 Coils Coil 209 236 - -
Vimu6g03936 267 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vimu6g03936 267 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vimu6g03936 267 MobiDBLite consensus disorder prediction 242 267 - -
Vimu6g03936 267 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Vimu6g03936 267 Gene3D - 133 254 - -
Vimu6g03936 267 PANTHER 40S RIBOSOMAL PROTEIN S6 1 260 IPR001377 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03936 Vimu-Chr6 38889550 38891739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03936 63 262 Cytoplasmic Ribosomal Protein Gene Family AT4G31700 82.000 7.77e-102 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03936 K02991 - gmx:547746 430.639