Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03931 ATGCAGTTTGTTATTACGATTTTCATGTCCATGTTACGAAATATGGAACCACTTGACATGGAAGTAGTTGACCTGGAAGCAGTGGAGTTGGAAGGAGTTCCTTCATGTGAGGTCAACACGGATGACGTGGATAATGTGGACAATAATGTTCCAAAACTGCAGATGTCTTTCGATACAATAGATCAGGTGAAAAGTTTTTATAGAGACTATGCCGTCAGATGTGGTTTTGTTGTTCGGATAAGGAGCTCCAAGAAAAATAACAACAATCAATTGACGTTCATGAAATTAGTGTGTTCTCGGCAAGGGAAGTACATTTCTTCCATTTCTCCAGATTTCAAAACTCAGCCCAGTCAAAGAAACGAATGCCCTGCTGGAATCACGGTTTCTCTTAAAGAAGGAAGATGGTATGTAGGGACAGTTGTCACCGAACACAACCATGACATGTGTCCGAAGAACTCAAACCTTATTCGTGGTAATCGAAAACTAAATATGCATTCGAAGCACACTCTTACCATGAATGATGATGCTGGTGTGCGCATTAACAAAAGCTTCATATCATTGGTTAATGATGCTGGATGGAGATGGACAAGCACTTCTAAAATACTTTTCAAGAATGAGAGAATTGAACAACGAATTTTCTATGAGATTGAAATGGACGAGCATAACAGAATCTGTAGTATGTTTTGGGCTGATGCACGCAGTCGTGCAGCTTGTGTAGATTTTGGTGATGTCGTCTCATTCGACACAACCTACCTAACAAACAAATATGACATGCCGTTTGCTCCATTCGTTGGAGTTAATCATCATGGTCATTCGATATTACTTGGTTGTGCTTTGATTTCAGCTGAGGACACTTCAACATTCACATGGTTATTTACTTGTTGGCTTAGATGTATGTCTAACAAGCCTCCGATTAGTATCGTCACAGACCAATGTAAGGCAATGTCGAATGCCATAAAAGTTGTGTTTCCAACCACAAATCATCGTTGGTGCTTGTGGCACATAATGAAGAAAATACCAGAAATGTTGCAATCGTACAAAAGTTATGGACTCATCAAAAATCAACTAAAGACTCTTGTGTATGAGTCATTTAGTCCAGACGACTTTGAATTAGGGTGGGGAAATTTAATCACATGTCACGAGTTAGAGAGGAATGAATGGCTCAGTTCATTGTTTGAAGAAAGAAAGAGATGGTACGAAAATGCCCTACGACAGAAGGCCCAAAAAGAAAATGAAGCTGATTTCGCATCATTGAATTCCACAATCCCATGTGGATCTCAATCTCTTATTGAAAGACAATATCAAATGGAGTACACACAGGCTAAATTTGTGGAAGTTCAAAAGGAATTCAGATCAAGGATGAATTGCTTCATTAAGAATATGTGCACAGAAGGTTGTACGACTACATACAATGTCAAAGAAGAGTTCATTTGGGAGGGGCAATGTGGGTCAAAATTCTATGATGTTGATTATGATTCTCTCTCAAACGACATTCATTGCAGTTGCAAACTTTTTGAGTTTAGAGGAATTTTGTGTCGACATTGCTTATTGGTCCTAGCATCTTACAGCAACCACACTCAACAACCTAAGATGCAGAGATACCAAACTTTGTGTAAATGTTTCTATGACATCGCGGAGGAGGCATGTCAGTCTGAGACTACTTCGAAGAAGTTGCTTTCCGAGTTAAACTCTATAGGAAGAAGTTTAGGGGTACGAACATCACCGACATTGATGTTGGTCAACGATGATGGAATTGACATGCATGGAAATCCTCCTTCTACTGAAGAAGGTCGACCACCTTGTGAAGTTGATGGCTTGGTTGTTCACAGTCCTGTCTCTGTCAAACGCAAAGGGCGACCACGAACAAAGAGAATGCAACCAACAGTTGAAAAATTAATAAAGAAGAAAAAGTCCCATGGTGCTAAAAATAAACATACAGCGAATCATAGTGAAATAACTGATTGTCATGTCACAAACATCCATAATGTTGAGGACCTTGGAAGTCAACAGATGCTTGAATCTCAAGTTTCACAATCGGGATTCATGTCTTTATTGACATCTGCACAGTACAACAATGATAATGTTGACTTGTCACCATGTGATGGACTTTTGGAAGTGGACCAATTTTTGGGGTATGTTCCTTCATTTCATCATTCTTTGGGAGGAACTTCAAGACATTAG 2181 0.3939 MQFVITIFMSMLRNMEPLDMEVVDLEAVELEGVPSCEVNTDDVDNVDNNVPKLQMSFDTIDQVKSFYRDYAVRCGFVVRIRSSKKNNNNQLTFMKLVCSRQGKYISSISPDFKTQPSQRNECPAGITVSLKEGRWYVGTVVTEHNHDMCPKNSNLIRGNRKLNMHSKHTLTMNDDAGVRINKSFISLVNDAGWRWTSTSKILFKNERIEQRIFYEIEMDEHNRICSMFWADARSRAACVDFGDVVSFDTTYLTNKYDMPFAPFVGVNHHGHSILLGCALISAEDTSTFTWLFTCWLRCMSNKPPISIVTDQCKAMSNAIKVVFPTTNHRWCLWHIMKKIPEMLQSYKSYGLIKNQLKTLVYESFSPDDFELGWGNLITCHELERNEWLSSLFEERKRWYENALRQKAQKENEADFASLNSTIPCGSQSLIERQYQMEYTQAKFVEVQKEFRSRMNCFIKNMCTEGCTTTYNVKEEFIWEGQCGSKFYDVDYDSLSNDIHCSCKLFEFRGILCRHCLLVLASYSNHTQQPKMQRYQTLCKCFYDIAEEACQSETTSKKLLSELNSIGRSLGVRTSPTLMLVNDDGIDMHGNPPSTEEGRPPCEVDGLVVHSPVSVKRKGRPRTKRMQPTVEKLIKKKKSHGAKNKHTANHSEITDCHVTNIHNVEDLGSQQMLESQVSQSGFMSLLTSAQYNNDNVDLSPCDGLLEVDQFLGYVPSFHHSLGGTSRH 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03931 726 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 36 565 IPR031052 GO:0006355
Vimu6g03931 726 Pfam MULE transposase domain 244 338 IPR018289 -
Vimu6g03931 726 Coils Coil 399 419 - -
Vimu6g03931 726 SMART 26again6 498 525 IPR006564 GO:0008270
Vimu6g03931 726 ProSiteProfiles Zinc finger SWIM-type profile. 487 523 IPR007527 GO:0008270
Vimu6g03931 726 Pfam SWIM zinc finger 488 521 IPR007527 GO:0008270
Vimu6g03931 726 Pfam FAR1 DNA-binding domain 65 149 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03931 Vimu-Chr6 38798945 38801583 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu6g03931 MULE 2.4e-33 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03931 - - vra:106753371 758.059