Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03924 ATGGGATCCCTCAGAGACATCCTCGACAGCTTGCAGCATACCAACGAGGAGAGCAAGTCTCTGCATAAAGCTGAGGAACTCAAGGCCCTAAGGTGCAGGATCAACACCAACATTATTGCAGTCCTAAAGAAGGCCAGGACAATTCGGACCCAGCTCGAGGAGATGGACCGGGCCAATACCGCCAACCAGAGGCTCTCCGGTCTCAAGGACGGCATGCCGACCATCTACCGAACCCGGATCGCTGTCACCAATGGGTTGAGGAAGAAGTTGAACGAGGTGATGATGAGGTTTCAGGGGTTAAGGCAAAGGATGATCTACACATCTTCTATATCTATATTCAGAAGCTTGGGAGAGGTGGAGGGGTGGGGCGGGGTTGTGAGCAGGAGTAAAAGGGTAAAAAAAAAGTAA 408 0.5147 MGSLRDILDSLQHTNEESKSLHKAEELKALRCRINTNIIAVLKKARTIRTQLEEMDRANTANQRLSGLKDGMPTIYRTRIAVTNGLRKKLNEVMMRFQGLRQRMIYTSSISIFRSLGEVEGWGGVVSRSKRVKKK 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03924 135 Gene3D - 1 107 - -
Vimu6g03924 135 SUPERFAMILY t-snare proteins 4 104 IPR010989 GO:0016020|GO:0016192
Vimu6g03924 135 SMART SynN_4 1 109 IPR006011 GO:0016020
Vimu6g03924 135 Pfam Syntaxin 2 116 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03924 Vimu-Chr6 38713238 38713645 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03924 1 105 SNARE and Associated Proteins AT1G08560 52.381 3.61e-31 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03924 K08486 - vra:106773500 167.548