Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03913 ATGAATCCAGGGGCTCCCATTGCTTGCAGGACGCGTTACAAGAGGAGAAAGTTATTTGAGGATGCGTTAACAATGAGTCGGAATAAGTTAATAATGAGTCGGAATAAGAAGAAGGCACGAGAAGATGCAGGTGTGAAAATTGAACCTGTATCAGTCCATTCATCATCATCTTCTGCAGCTGTTTCAACCAACAGTGAAAGAATAACTGAAAGTGATTCTCAGGGTTTGGGAGAGCATGAGAATGACCCAATTGAAATCAGTGATGGTGACGACGGTAGTGAGGCTGATGAGAGGTTGAGGGATTCTCAAAGCAATATACTTTGTGATGAAGTAGAAAAGAAGAGTGATGAGGATGAAGGGTGTTTTGGGTGGGATGATAAAGTTGTGAACTTTGGCGATGATAACTTTGGTTGTGTATCTGACAACCCCGTTGTTGATGATGGTGATGATGAAGATGATCATGAATATGAGGATAATGAGAAGAGCGATGAAGATTTTCAGGTTGCGGATCATGATGGGTTTAAGACTGAAGGCTCGATCGGGGACGAGAGTGATGACGATGATGATCGTGATGGTGATGATGTGAGGGGAGGTCACAGGAAGATAGTGAAGGATATGGTGAAAAAGATGGAGAGTGATGCCGAAAGCAGTGAGATTCGTAAAAGGAAAGATAATGAACAGGTAGATAAGGAGGAGCAATGGATTATGGCTGATTGCACTAGTGCGATCTCTAGTAAATCTGAGATTTATAAGAAAGAGGGACAACATGCAGAACATAAACATGAAGCAAAGAGAGTGCAAAGTGTCATTGCTGATTCGGAAAATAAAAATATCGATCTTGACTCGGTGGATATTGCTGATATTAAAAGAAAAGAGAATCAACAAAACAAAGGAACAGGTACGAGAAGTGTTTCTTTTCGTCCCAAAAACCAAGAGAAGATAGGAGATTCCGCTAAAATTGTAATAGAAAAGGGCAATGAAGGGGAACGTAAATATTGGTTTAATAGTAATAACCGTAAGAAGGTCGGGGCAGTGGATGATGAAACTGGTGACAAAGAGTTTTATGAAGTACCAAGGATGCCATCCACATTGAAAAACAAATGTTATAAATTTTTTACTGAATGTTTTAAGGATGATTCAGATAAGTTGGATGAAAAGGATGATGTTGTTGTTGAGGGTCAGACTCAGGCAGAAAAACCTGTTGAAAAATCAGAGGAAGAGGAGTTAGATATGTTGTGGGCTGAAATGGATATGTTGCTTCGAGCTGAAGAAATTGGAAACCAGGTTAATAATATGTCAAAGGAAGCAACAGAAAACGAAGAAGGTCCAGCCTTGAAGTGCAAGCATAAAACTACTTTTGATGAGCAGATTGGGATATATTGTATATGGTGTGGTTGGATCGAAACTGAAATCAAATATATCACGCCACCATTTGTAAGCACGGTGGATTCTGAAAGATATGGTGGTAGAATGGCGTCATCCAGTGAAGGGAAAACCTCACTATTGGATGAGGCTCTGTTTGATGAGTCTGGTGATGACTCGGAGGTAATTTGGTCTCAGAATGAAGGCACTGTTTGGGACCTTATTCCTGACATTAAACAAAGTTTGTATCCTCATCAACAAGAAGGGTTTGAGTTTATTTGGAGAAACTTGCAAGGAACTATTGACCTTGCCGAATTGAAATTGAAGAAGGATTACCCTTGCAATGAAGGAGGCTGCATTATTTCTCATGCTCCTGGAACAGGAAAGACTAAGTTGACAATGGTGTTTCTTCAGTCGTATTTGCAATTGTTTCCAAAGTGTCTACCTATTATCATTGCTCCTTCCAGCATATTGCTTACCTGGGAAGACGAGCTAAGAAAGTGGAAACTAGGAATTCCATTCCATAACTTGAACAGTGCTGAATTATCAGGGAAAGAACAATTCATCGACGAAGTTGATTGGTCTGGCAACCAGAGGCAGAATAAGGATGCCATTCGGATGGTGAAATTGTGTTCATGGTACAAAGAGAAAAGCATTCTACTAATAAGCTACAATTTGTATGAGAAGCTAGCAGGGGCCACATCTGTAGGTGGTGGTGGTGGTGGAGGAAAAGATAAGAATAATAAAAAGAAACGGCCAAAGACAAGGGAGTACATTGAAAGTGGAATGGGAAAGGTTCTGCGTGACTATCCCGGTTTGCTAGTACTTGACGAAGGGCACACTCCTCGGAACCAGAATAGTTATATTTGGAAGGTTCTATCTGAAAGTAGAACTAAGAAGCGAATTCTTCTCTCAGGGACTCCTTTCCAGAATAACTTTTTGGAATTATACAATATTTTGTGCTTAATGAAACCATCCTTTCCTGAGAGCATCCCACAAGAACTCAAGAAGTTTTGCCAAAGTAGACTAATGCAAGGAAGGAAAGCTTCGAAAGAAATGAGTTGGGAACCTGTTTCTTCTGGAAATCCAGCTGATGTGAAAATAAAGCAGCTAAAATTGCTGATGAACCCCTTTGTTCATGTTCACAAAGGTAGCATTCTTGAGAAGAACCTTCCTGGGTTGAGAGAATGTGTGCTGGTTCTGAAGCCAGACATTTTGCAGCAAGAAACTCTAGAGAGCATTGAATGCACTCAAAACGTACTAAACTTTGAACACAAGTTAGCCTTGGTCTCAGTCCATCCATCACTTTTCCTCAGCTGCTCCTTGTCAAAAAAAGAAGAATCTATTATTAACAAGGATAGGTTGGAAAAAATTCGACTGGACCCTTATGCAGGGGTGAAAACAAAGTTTCTGATAGAGTTTATAAGACTATGTGATGCAGTAAATGAGAAAGTCCTTGTTTTCAGCCAATTCATTGATACTTTAAACTTAATCAAGGACCAGATAGCGTCAGCCTTGAATTGGAGTGTGGGGACGGAAGTGTTATATATGTATGGGAAGCTTGAGCAAAAGCAGAAACAGTCCCTCATTTATAGTTTCAATGATGCAAATAGCCGAGCAAAGGTGTTACTTGCTTCTATAAAAGCATCTTCTGAAGGCATTAACTTAATCGGAGCTTCAAGGGTGGTGCTTCTTGATGTTGTTTGGAATCCCTCAGTGGAAAGGCAAGCTATTTGTAGAGCATATAGACTTGGACAAAAGAAAGTTGTTTATACTTATCATCTTCTTGCCCAGGGCACCCCTGAATGCACCAAATATTGCAAACAAGCAGAAAAGAACCGTTTATCTGAACTGGTTTTCTCAAATAAAAATCCTGAAAGCGAAAAGCTGAAGAGGAGTGGAGTAATGCTTGAGGATAAAGTTCTTGACGTCATGGTTGAGCATGAAAAACTCAAGGATATGATTGGTGAATGTCTAATTCAACCTAGGAAGAGAGATTTTGAGATTATTGGAATTTCGTTAAGTTAG 3390 0.3997 MNPGAPIACRTRYKRRKLFEDALTMSRNKLIMSRNKKKAREDAGVKIEPVSVHSSSSSAAVSTNSERITESDSQGLGEHENDPIEISDGDDGSEADERLRDSQSNILCDEVEKKSDEDEGCFGWDDKVVNFGDDNFGCVSDNPVVDDGDDEDDHEYEDNEKSDEDFQVADHDGFKTEGSIGDESDDDDDRDGDDVRGGHRKIVKDMVKKMESDAESSEIRKRKDNEQVDKEEQWIMADCTSAISSKSEIYKKEGQHAEHKHEAKRVQSVIADSENKNIDLDSVDIADIKRKENQQNKGTGTRSVSFRPKNQEKIGDSAKIVIEKGNEGERKYWFNSNNRKKVGAVDDETGDKEFYEVPRMPSTLKNKCYKFFTECFKDDSDKLDEKDDVVVEGQTQAEKPVEKSEEEELDMLWAEMDMLLRAEEIGNQVNNMSKEATENEEGPALKCKHKTTFDEQIGIYCIWCGWIETEIKYITPPFVSTVDSERYGGRMASSSEGKTSLLDEALFDESGDDSEVIWSQNEGTVWDLIPDIKQSLYPHQQEGFEFIWRNLQGTIDLAELKLKKDYPCNEGGCIISHAPGTGKTKLTMVFLQSYLQLFPKCLPIIIAPSSILLTWEDELRKWKLGIPFHNLNSAELSGKEQFIDEVDWSGNQRQNKDAIRMVKLCSWYKEKSILLISYNLYEKLAGATSVGGGGGGGKDKNNKKKRPKTREYIESGMGKVLRDYPGLLVLDEGHTPRNQNSYIWKVLSESRTKKRILLSGTPFQNNFLELYNILCLMKPSFPESIPQELKKFCQSRLMQGRKASKEMSWEPVSSGNPADVKIKQLKLLMNPFVHVHKGSILEKNLPGLRECVLVLKPDILQQETLESIECTQNVLNFEHKLALVSVHPSLFLSCSLSKKEESIINKDRLEKIRLDPYAGVKTKFLIEFIRLCDAVNEKVLVFSQFIDTLNLIKDQIASALNWSVGTEVLYMYGKLEQKQKQSLIYSFNDANSRAKVLLASIKASSEGINLIGASRVVLLDVVWNPSVERQAICRAYRLGQKKVVYTYHLLAQGTPECTKYCKQAEKNRLSELVFSNKNPESEKLKRSGVMLEDKVLDVMVEHEKLKDMIGECLIQPRKRDFEIIGISLS 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03913 1129 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 564 780 IPR014001 -
Vimu6g03913 1129 MobiDBLite consensus disorder prediction 93 124 - -
Vimu6g03913 1129 Gene3D - 846 1114 IPR027417 -
Vimu6g03913 1129 SMART helicmild6 954 1039 IPR001650 -
Vimu6g03913 1129 MobiDBLite consensus disorder prediction 289 310 - -
Vimu6g03913 1129 MobiDBLite consensus disorder prediction 50 71 - -
Vimu6g03913 1129 Pfam SNF2-related domain 563 866 IPR000330 GO:0005524|GO:0140658
Vimu6g03913 1129 MobiDBLite consensus disorder prediction 251 276 - -
Vimu6g03913 1129 MobiDBLite consensus disorder prediction 192 232 - -
Vimu6g03913 1129 Pfam Helicase conserved C-terminal domain 924 1039 IPR001650 -
Vimu6g03913 1129 SMART ultradead3 532 788 IPR014001 -
Vimu6g03913 1129 MobiDBLite consensus disorder prediction 144 163 - -
Vimu6g03913 1129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 725 1086 IPR027417 -
Vimu6g03913 1129 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 927 1085 IPR001650 -
Vimu6g03913 1129 MobiDBLite consensus disorder prediction 251 269 - -
Vimu6g03913 1129 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 58 1120 IPR044567 GO:0080188
Vimu6g03913 1129 MobiDBLite consensus disorder prediction 164 180 - -
Vimu6g03913 1129 CDD SF2_C_SNF 921 1050 - -
Vimu6g03913 1129 MobiDBLite consensus disorder prediction 31 232 - -
Vimu6g03913 1129 MobiDBLite consensus disorder prediction 690 710 - -
Vimu6g03913 1129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 526 800 IPR027417 -
Vimu6g03913 1129 Gene3D - 512 814 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03913 Vimu-Chr6 38548289 38552333 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03913 937 1085 RAD5 or RAD16-like Gene Family AT5G43530 35.570 3.76e-18 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu6g03913 SNF2_N 2.3e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03913 K10875 - gmx:100812737 1306.2