Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03906 ATGTACCAGTCTATTGCTCGCAGGACTCGAAGCAAGAATCCTTGGGTGGTCGGAGGAGAGTTGACAGTGGGTCGGAAAAGAAGAAAACTGGAAGAAGATGATGATGAAGTCATTTGCTTGGGAGAAAATTTGGAAGGCAAAGGGGCTGCAAGAGAGAAATTTGCATCTGCGTCTGGGGCTGGGGCTTCATGTTCATCACCAGATGATATGAAGAATGGTTTCATGTATTTGGGAGAGACTCAGGATGATCCTGATCCTGATCCTGAAAAGGTGGTTGACGTCGAAGGCCATGACGAAGCTGAAGTGAGGATTGAGTGTTACGAAACCAAGGGTTTTCAGGTTAAGGAGGAAGAGAGGGATGAGGAAGGTGAAGGGTGTTCTGTATCAGCTGATAAAGGTGAGTGCTTTGATAATGAATACGGCACTAAACCTGAAAAGCCGGTTGTTTTGTTGCCCCATTCATTTAGGAGTGGACGTAGTAGTTCTGATGAAGGATATGATTCGTTGTGGTCTTCAACGGAGAGTGAGGATGTTGAGACTAGTGACGATGATTTTAAGGTTGATGAGGAGGATGATGATGACGAGGATGTTGAGAGTGACTCTAGCAGTGAGGAGAGTGATTCTTCTGAAGATGATGAGAGGAGGGGATACAAGATGGTTAAGGAAAGAGTAAGAAAGGTGGTGAGTGAATCTGAGAGCAGTAGAGTTTGGAGAAGGAAAGGTGAAAGAAAGAATAAGCATGTAGAGAAGGAGTTGGTGGAGAAATGGAATAGTGGTGATTGTGCCAGCGTGGCATCTAGTAAATCAGATATCAATAAGGAGGAAACAGAAAGTGCACAAGAGAATAGACAAAGAGCAAACAGAGTAGATGTCAATAATGCTGATCCTGAAGTTTTGAGTGATCAGGGGAAAAGTTCAGTTCTTTCTGTGTCTTCTGATGATGATGATGATGCACTAGAGGATAAGGAGAAAGGAGTGAGGGATAATCCAAAGGTGTTTTTTCAAAAGGAGACACGATATTCAAGTGTGATCAATAAGTGTGGGAAAAATAAGAAGGTCAAGGCCAATGCTAAAGAAACTGAACACAAAGATGAGCTGCCTGAAATGCCGAGGATGTCATCGACAACAAAGAACCAATATTTTGAATTCTTCAATGAATGCTTTAGGGGAAAGCGTCATTCTGCTAAAGATGTTTCAAGAGATTTGGAGAAGGTTGGTGTTGGTGAGGGTCAGACTCGACCATTTGGTTCAAGGGAGACAATTTCTTTAAACTGGAACTCCATGATGAAAGAAAAACTTGTTGAGAAATCTGAGGAAGAGCAAGAGTTGGATATGCTGTGGGAAGAAATGGATATGTTGCTTCAAGCCGAAAAAATTGGAATCCAGGGTGCAGAGATAGATGAATCAAGAGAAATAAAAGAAAATTCAGTCCCTCGATGCAAACATGATACCATTTTTAATGAGGAGATAGGAATATATTGTAGATGGTGTGGTTGGATTGAAACTGAAATTAAATATATCACACCACCGTTTATAGATTCTGAGAGATATGGCACAAGGGTGTCGTCTGGTGGAGGGAACACCTCGCGACTTGATGGAGTTATCTTCAGTGAATGTGGTGAAGACTCAGAAGCAGTTAGGTCTCACAATCATGGTACAGTTTGGGACCTTACTCCAGGCATAAAAGAAAGCTTGTTTCCTCACCAACAAGAGGGATTTGAGTTTATTTGGAAAAATTTGGCAGGAAGCATTGAACTTTCAGAGTTGAAGATGGTTGATCCTGAGAGAGAGGGTGGGTGCATAGTTTCTCATGCTCCTGGAACTGGAAAGACGAGGTTGACCATGGTGTTTCTGCAGACATATTTGCAGGTGTTTCCTAATTGTTTACCCATTATCATTGCTCCTGCCAACATATTACTCACTTGGGAAGATGAGCTGAGGAAGTGGAACATAGGAATTCCATTCCATAATTTGAACAATGCTGAATTATCAGGGAAGGAACACGGCATTAGGGAAGTTGATTGGTTATTCAACCAACATCAAAAGAAGGATGTCATAAGAATGTTGAAGTTGTGTTCTTGGTACAAAGAGAAGAGCATTCTGTTAATAAGCTACAATCTTTATGAAAAACTAGCTGGGGGAAAGTCTGAAGGAGATGATGGGGAGAAAGAGAAGAACAATAGAAAGAATGGAAAACAGAAGAAAAATAGAAAGATCGGAAAAGAGAAGAAACGTGTTGAAACTGAATTGGGAAATGTTCTTAGAGACTATCCTGATTTATTAGTTCTTGATGAAGGCCACACACCAAGGAACAAGCGAAGCTGTATTTGGAAGGTTCTCTCAGAGAGTAGAAGTCAGAAGCGGATCCTTCTTTCAGGGACTCCTTTCCAGAACAATTTTCTTGAACTATACAATATTTTGTGCTTAATGAAACCATCTTTTCCTGAAAGCATACCGCAGGAACTCAAGAAGTTCTTGAAAAACAAACTGATACAGGAAACGAAAACTTCAAAAGACGAGAGTTGGGAACCCATTTCTGCTGGAAATCAAGCCGATGAAAAGATAAACCAGCTAAAGCAGCGGATGAATCCCTTTGTTCATGTTCACAAAGGTAGTATTCTTCAGAAGAACCTTCCTGGTTTAAGAGACTGTGTGCTGGTTTTGAAGCCAGAATGCTTGCAGAAAAACATTCTGGAGAGCATTGATTGTTCTCAAAATGCACTTAACTTTGAGCACAAGTTGGCCTTGGCCTCTGTTCATCCCTCCCTTTTCCTAAACTGTGCTCTGTCAAAGAAAGAAGAATCTGTCATTGATTCGGAGCTATTGGAAAAGATTAGATTGGACTCTTATCAAGGGGTCAAAACCAAATTTCTGATTGAGTTTGTGAGACTATGTGATGCAGTTAATGAGAAAGTCCTTGTGTTCAGCCAGTTCATTGATACCTTATGCTTGATAAGGGACCAGCTGGAGTCAGCCTTCAACTGGAGTGTGGGAACGGACGTGTTGTATATGCATGGCAAGCTTGATCAAAAGCAAAAGCAATTTCTCATTCACAATTTCAATGATACAAAAAGCCAGGCAAAGGTGATGCTAGCTTCTATAAAAGCATCTTCTGAAGGCATTAACCTGGTTGGAGCTTCAAGGGTGGTGCTTGTTGATGTTGTTTGGAATCCCTCAGTGGAAAGACAAGCTATTTGTAGAGCATATAGACTTGGACAGAAGAGGGTTGTTTATACTTATCATCTTCTTGCACAGGGCACCCCTGAATGTGCAAAATATGATAAACAGTCAGAGAAGGACAGGTTATCTGAACTGGTATTCTCAAGTAGGAATGTTGAAAATGATAAGCTTGAAAATGTTGGAGTGAAGTTTGAAGATAAAGTTCTTGATCTCATGGTTCAGCATAACAGTCTCAAGGACATATTTGGTCAATGTCTGGTTCAACCAAAGGACAGAGATTTGGAAACTTTAGGCCCTTAA 3480 0.4103 MYQSIARRTRSKNPWVVGGELTVGRKRRKLEEDDDEVICLGENLEGKGAAREKFASASGAGASCSSPDDMKNGFMYLGETQDDPDPDPEKVVDVEGHDEAEVRIECYETKGFQVKEEERDEEGEGCSVSADKGECFDNEYGTKPEKPVVLLPHSFRSGRSSSDEGYDSLWSSTESEDVETSDDDFKVDEEDDDDEDVESDSSSEESDSSEDDERRGYKMVKERVRKVVSESESSRVWRRKGERKNKHVEKELVEKWNSGDCASVASSKSDINKEETESAQENRQRANRVDVNNADPEVLSDQGKSSVLSVSSDDDDDALEDKEKGVRDNPKVFFQKETRYSSVINKCGKNKKVKANAKETEHKDELPEMPRMSSTTKNQYFEFFNECFRGKRHSAKDVSRDLEKVGVGEGQTRPFGSRETISLNWNSMMKEKLVEKSEEEQELDMLWEEMDMLLQAEKIGIQGAEIDESREIKENSVPRCKHDTIFNEEIGIYCRWCGWIETEIKYITPPFIDSERYGTRVSSGGGNTSRLDGVIFSECGEDSEAVRSHNHGTVWDLTPGIKESLFPHQQEGFEFIWKNLAGSIELSELKMVDPEREGGCIVSHAPGTGKTRLTMVFLQTYLQVFPNCLPIIIAPANILLTWEDELRKWNIGIPFHNLNNAELSGKEHGIREVDWLFNQHQKKDVIRMLKLCSWYKEKSILLISYNLYEKLAGGKSEGDDGEKEKNNRKNGKQKKNRKIGKEKKRVETELGNVLRDYPDLLVLDEGHTPRNKRSCIWKVLSESRSQKRILLSGTPFQNNFLELYNILCLMKPSFPESIPQELKKFLKNKLIQETKTSKDESWEPISAGNQADEKINQLKQRMNPFVHVHKGSILQKNLPGLRDCVLVLKPECLQKNILESIDCSQNALNFEHKLALASVHPSLFLNCALSKKEESVIDSELLEKIRLDSYQGVKTKFLIEFVRLCDAVNEKVLVFSQFIDTLCLIRDQLESAFNWSVGTDVLYMHGKLDQKQKQFLIHNFNDTKSQAKVMLASIKASSEGINLVGASRVVLVDVVWNPSVERQAICRAYRLGQKRVVYTYHLLAQGTPECAKYDKQSEKDRLSELVFSSRNVENDKLENVGVKFEDKVLDLMVQHNSLKDIFGQCLVQPKDRDLETLGP 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03906 1159 Gene3D - 881 1144 IPR027417 -
Vimu6g03906 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 556 840 IPR027417 -
Vimu6g03906 1159 SMART helicmild6 987 1072 IPR001650 -
Vimu6g03906 1159 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 591 813 IPR014001 -
Vimu6g03906 1159 Gene3D - 540 866 IPR038718 -
Vimu6g03906 1159 MobiDBLite consensus disorder prediction 155 175 - -
Vimu6g03906 1159 Pfam Helicase conserved C-terminal domain 959 1072 IPR001650 -
Vimu6g03906 1159 MobiDBLite consensus disorder prediction 714 742 - -
Vimu6g03906 1159 Pfam SNF2-related domain 579 900 IPR000330 GO:0005524|GO:0140658
Vimu6g03906 1159 MobiDBLite consensus disorder prediction 57 89 - -
Vimu6g03906 1159 MobiDBLite consensus disorder prediction 208 256 - -
Vimu6g03906 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 758 1116 IPR027417 -
Vimu6g03906 1159 SMART ultradead3 561 821 IPR014001 -
Vimu6g03906 1159 MobiDBLite consensus disorder prediction 270 290 - -
Vimu6g03906 1159 MobiDBLite consensus disorder prediction 176 207 - -
Vimu6g03906 1159 CDD SF2_C_SNF 929 1083 - -
Vimu6g03906 1159 MobiDBLite consensus disorder prediction 113 330 - -
Vimu6g03906 1159 MobiDBLite consensus disorder prediction 113 128 - -
Vimu6g03906 1159 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 960 1128 IPR001650 -
Vimu6g03906 1159 MobiDBLite consensus disorder prediction 714 729 - -
Vimu6g03906 1159 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 89 1153 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03906 Vimu-Chr6 38322731 38326727 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03906 970 1124 RAD5 or RAD16-like Gene Family AT5G43530 36.774 1.06e-19 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu6g03906 SNF2_N 6.6e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03906 K10875 - gmx:100806733 1209.51