Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03902 ATGAAGCTGAATCGCCTCTGCATCGTTTTACCACCAAATTCTGGTGAAATGGTGGTGCCACTTGAAAAGGGTGCCCAACAAGAACCCTTCCAAACACCAAAGAAACAAGCTGTTGAGGCCAAACAGCCTCAAAGGGCTTGTGGGGGACAAGTTCTTGCTTCTCTTAGAGATTTTTTGGGCAAGTTATATGACTCAGGGTGGTGGAGAATTTGCCAAAAGGGAGAGCACAAAGAGAAGCACGACTCTGGTGTGTTGTTTCATGACATGGATGGTGTGCAAGTTTCTGTTAACGTTGGCAGGGACAACCCCAGAATTTTCAGCTATGCAGAGCTGTTCATAGGGTCTAATGGTTTCAGTGAAGACCAAGTTTTGGGGAGTGGAGGGTTTGGCAAAGTGTACAAGGCCGTTTTGCCGAGTGATGGAACCGTGGTTGCTGTGAAGTGCTGTTTGGCAGGGAAAGGGAAGCAGTTTGAGAAAAGTTTTGCAGCGGAGTTAACAGCCGTCGCTGATCTCCGCCACAAGAATCTTGTAAGGCTGAGGGGTTGGTGTGTCAATGAAGATCAGTTGCATCTTGTTTATGACTACATGCCAAACCGAAGCCTTGACCGTGTTCTGTTTCGCAGACATGAGAATTTGAAGGCCAAGCCTCTTCAATGGGGACAAAGAGTGAAGATTGTGAAAGGTTTGGCAGCTTCATTGTACTATCTCCATGAGCAACTAGAGACTCAAATCATTCATAGGGATGTTAAGACCAGCAACGTTATGCTTGATTCCCATTACAATGCTCGGTTGGGTGACTTTGGCATGGCAAGGTGGCTTGAGCATGAGCTTGAGTATGAGTATAAGAATAAGAACAGGAAAACAACATCAATCAGAAGTGACCATTTCAGATTGGGAGAAACTTCAAGAGTAGGGGGCACAATTGGGTATCTTCCTCCTGAAAGCTTGCAGAAACCAAGCAATGCTACCTCCAAATCTGATGTCTTCAGTTTTGGGATTGTTGTGTTAGAGGTGGCATCTGGAAGGAGAGCAATTGATCTCACACAGCCAGATGAACAAATGATTCTGCTTGACTGGATTAGAAGGCTTTCTGATGAAGGGAAGCTTCTGGAAGCAGCTGATACAAGGCTACCAGATGGATCCTTCATGCTCTCAGAGATGCAGCATTTCATTCACACAGGCCTCCTCTGCACACTCCATGACCCACAATTGAGGCCAAGCATGAAATGGGTAGTGGAAGCTCTTTCTGACTTTTCTTTTAAACTACCACCACTCCCTTCTTTTCTCTCCCACCCTTTATACATCTCTTTGTCTTCCCCATCTGATACTAGTCACAGTCCAAGCAGCACAAGTGGCACTAGCTCCACCACAGATAATGCAAGCATAACCACCAACAATACCTCAAACTATGTCACGGCAGCAGGTGAAACTGTGTATGTAACCGCTGAGTACAAGAACAGTGAAATCGTCTCTTCTAAGAGCATGCACCACCAGCGACCATTTCCTGTGGTAGAAACTCCAAGAGAAATATCATACAAGGAGATTGTTTCTGCTACAGATAACTTCTCTGATTCAAGAAGGGTGGCCGAGCTAGACTTTGGAACTGCTTACCATGGCATCCTTGATGACAAATGCCATGTTTTGGTGAAACGCCTTGGGATGAAGACTTGTCCTGCACTGCGTGATAGATTCTCCAACGAACTCCGGAACCTGGGACGGCTTCGCCACAGGAATTTGGTTCAACTTCGTGGATGGTGCACTGAGCAAGGAGAGATGCTTGTTATTTATGATTACTCGGCAAGTAGAATCCTCAGCCAACTGCTTATGCATCATAACAATGGAACTCGAAGTGGAGCTTCTTTCCTCCAATGGCATCACAGGTACAACGTAGTGAAAGCACTGGCCTCTGCAGTACTATATCTACATGAGGAATGGGATGAACAAGTGATCCACAGAAACATTACTTCTTCCGCTGTCATTCTTGAGCCAGATATGAATCCAAGACTCAGCTCTTTTGCTCTGGCAGAATTTTTGTCAAGGAATGAGCATGGTCATCATGTAGTTTCTGACACTAGAAAATCGGTTCGTGGGATTTTCGGCTACATGTCACCAGAATACGTGGAATCAGGCGAAGCAACCACTGAAGCTGATGTTTATAGTTTTGGTGTGGTGGTGCTTGAAGTTGTGAGTGGACAGATGGCAGTAGATTTCAGGCAACCAGAGGTACTTTTGGTGAAGAAGGTTCATGAATTTGAGATGAGAAAAAGACCATTGAAAGAATTAGCTGACATTAGACTCAATGGAGAATACAATGACCAAGAATTGATGAGATTAGTAAGGTTAGGAATTGCTTGCACAAGTTGCAACCCGCAGCTAAGACCAAGCATGAGACAAATAGTAAGCATCCTTGACGGCAATGACAAATTACTTGTCCAGAATAGCAGGGAGAGCAGGGAGGAATGGAGACAAAAAAACTACCGTTCTTTGTCAATGGTTAAGAGAATCCAAGCTCTAGGAATACAGTAA 2526 0.4493 MKLNRLCIVLPPNSGEMVVPLEKGAQQEPFQTPKKQAVEAKQPQRACGGQVLASLRDFLGKLYDSGWWRICQKGEHKEKHDSGVLFHDMDGVQVSVNVGRDNPRIFSYAELFIGSNGFSEDQVLGSGGFGKVYKAVLPSDGTVVAVKCCLAGKGKQFEKSFAAELTAVADLRHKNLVRLRGWCVNEDQLHLVYDYMPNRSLDRVLFRRHENLKAKPLQWGQRVKIVKGLAASLYYLHEQLETQIIHRDVKTSNVMLDSHYNARLGDFGMARWLEHELEYEYKNKNRKTTSIRSDHFRLGETSRVGGTIGYLPPESLQKPSNATSKSDVFSFGIVVLEVASGRRAIDLTQPDEQMILLDWIRRLSDEGKLLEAADTRLPDGSFMLSEMQHFIHTGLLCTLHDPQLRPSMKWVVEALSDFSFKLPPLPSFLSHPLYISLSSPSDTSHSPSSTSGTSSTTDNASITTNNTSNYVTAAGETVYVTAEYKNSEIVSSKSMHHQRPFPVVETPREISYKEIVSATDNFSDSRRVAELDFGTAYHGILDDKCHVLVKRLGMKTCPALRDRFSNELRNLGRLRHRNLVQLRGWCTEQGEMLVIYDYSASRILSQLLMHHNNGTRSGASFLQWHHRYNVVKALASAVLYLHEEWDEQVIHRNITSSAVILEPDMNPRLSSFALAEFLSRNEHGHHVVSDTRKSVRGIFGYMSPEYVESGEATTEADVYSFGVVVLEVVSGQMAVDFRQPEVLLVKKVHEFEMRKRPLKELADIRLNGEYNDQELMRLVRLGIACTSCNPQLRPSMRQIVSILDGNDKLLVQNSRESREEWRQKNYRSLSMVKRIQALGIQ 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03902 841 Gene3D Phosphorylase Kinase; domain 1 481 598 - -
Vimu6g03902 841 SMART serkin_6 118 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03902 841 ProSiteProfiles Protein kinase domain profile. 118 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03902 841 Pfam Protein kinase domain 119 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03902 841 PANTHER - 80 417 - -
Vimu6g03902 841 SUPERFAMILY Protein kinase-like (PK-like) 102 455 IPR011009 -
Vimu6g03902 841 ProSitePatterns Protein kinases ATP-binding region signature. 124 153 IPR017441 GO:0005524
Vimu6g03902 841 FunFam Receptor like protein kinase S.2 196 421 - -
Vimu6g03902 841 Gene3D Transferase(Phosphotransferase) domain 1 603 829 - -
Vimu6g03902 841 Pfam Protein tyrosine and serine/threonine kinase 528 803 IPR001245 GO:0004672|GO:0006468
Vimu6g03902 841 FunFam Receptor like protein kinase S.2 600 826 - -
Vimu6g03902 841 Gene3D Phosphorylase Kinase; domain 1 90 195 - -
Vimu6g03902 841 FunFam Receptor like protein kinase S.2 92 195 - -
Vimu6g03902 841 MobiDBLite consensus disorder prediction 440 465 - -
Vimu6g03902 841 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Vimu6g03902 841 ProSiteProfiles Protein kinase domain profile. 522 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03902 841 Gene3D Transferase(Phosphotransferase) domain 1 196 420 - -
Vimu6g03902 841 SUPERFAMILY Protein kinase-like (PK-like) 495 803 IPR011009 -
Vimu6g03902 841 FunFam Receptor like protein kinase S.2 482 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03902 Vimu-Chr6 38262397 38265553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03902 508 804 Receptor kinase-like Gene Family AT5G55830 36.545 1.47e-53 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vimu6g03902 Pkinase 9.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03902 - - vun:114184452 1590.47