Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03898 ATGTCCTTCAATCAATCAAAGTCCGACAAGAGCGACGCTGTGTACCGAAAATCCGGGCGATCCGCCAGCTTCAATCAGCAGCGAGGCTCCTCCGGCGGTGCGTACGGCAGGGGCGGAGGCGGCGGTGGCGGCGCCGGGCCTTCTCCGTCGCTCTCCTCTAACCGGAGGGTAAACCCTGCACTGGTGAATTCGGCTGAGTCTAATAGTACTTATGCAGCCCGGACTGTTGCAAACGGTTCCCACTTACAGCCACAGATTCATGTGCGGTGGTATGTTGTTGAGGGGAATTATATGCACATTGCAATAGGCAATGTGAGAGTATCTGATGCGCCAGTTACTAATGCAACTGCCAAGCCATTTGAATCTTCAGCTGTGCAAAGGAGCACCAGAGCTGTTCCAAAAGCTCCTACTTCTCAACCTCCCTCCATGAGTTCTGATCCAGCCGCCCCTACAACTCCTGCTAAGGCAGATGCATCTAAGGCATTTCCTTTCCAATTTGGATCCATCAGTCCTGGCTTTATGAATGGGATGGCTATTCCTGCTCGCACAAGCTCAGCTCCTCCTAATATAGATGAGCAGAAACGCGATCAGGCAAGACATGATTCTTTTAGACCTGCACCCTCGTTGCCAACACCTCCTGTTCCAAAGCAGCAGGCAGTAAAGAAGGATACAGGTGTTACTGACCAATCTAATACTGGAGAGACTCATACTGGGACTAGGGCAAAAAAGGATACTCAAGTGTCACCGTTACCCCCAGCAAGCCAGATGCAAAAGCCTTCTGTCATTCCTTTAACTGGAATTTCAATGCCAATGCCATACCACCAGTCACAGGCATCTGTACACTTTGGTGGTCCTAATCCACAGATTCAATCTCAAGGTATGTCATCAGCACCTCTTCAGATGCCCTTGCCAATGCCTTTGCCGATTGGAAGTGCCACTCAAGTGCAACAACCGGTTTTTGTTCCAAACCTTCAACCTCATCCTATTCATCCTCAAGGAATCATGCATCAAGGCCAAAGCATGGGTTTCACTCCTCAAATTGGCCCTCAGTTGTCCCATCAGTTAGGCAACATGGGTATTGGAATTAGCCCACAATATCCACCACAGCAAGGAGGAAAATTTGGTGCTCCTCGTAAAGCTACTCCTGTCAAGATAACCCATCCTGAGACACATGAAGAGCTAAGACTTGATAAAAGGGCAGATGCATATTCAGATGGTGGGTCATCTGGTGTGAGGCCTCATTCTGGTATGGCTTCTCAATCTCAGCCTGCCCAGCCATTTGCAGCTTCTCATCCTATTAGTTACTATCCATCAAGCTCATATAGTACCAATTCTCTCTTTTATCCAACTGCTAGTTCTCTTCCATTAACAAGTAGCCAGATAACACCTAATTCCCAGCCACCCAGATTTAATTATGCTTTGAGCCATGGTCCGCAGAATGTTAGTTTTGTAAATTCATCATCTCATAGTTCCGTGCCTGTTAATAAAGCTGGCACTCCTATTGCTGGAAATGCTGAACCGCCTAATCCAGAATTTTCTCGTGATGTGCATAGTGCAATCTTATCTGCTCCGTCAGGAGTAACCTCTGTGTCAATTAAACCAAGTGGTGGACCTGGTGTTGCAGATTCGCTTGCCAATTCCAGTATCCAAAAGAGTGTATCTCCTAGTTCTGCATTAACATCTGGTGATGCTTTCTCTTCTGCACAACTAAAAGGGTCTGAAATAGCTGAAATATCTTCCCAGCAGTCTAAGTTCTCCACTGATTCATCAGTCGTGAACTCATTTCCAAATCTATCTTCTGCAAAGCCTGCATCAGCTTCCTTGTTACTTTCTACATCTGCTGTCTCTGAAGATTCTGTTTCAGTTATACCTAATAATGAAGGCAGAAAGAAGGAATCTGTTAGTAGGTCAAATTCTTTGAAGGATAATCAGAAGAAAATACAGAAGAAAGGGCCATCACAGCATCAGGGTGCTGTTCAATCTGCTCCTGTGGTTAATGTGCCTTCCCAAGCTGTTGATGGTGGTATACCTGATGATGTTTCTGAAACTACGGGAACTGGAGCAAACGATTCTGTAGTAATTACGAGTGAAAATATCTCAACTGCAAATTCAGACTTGTTATCGGCTACTAGTGGTAGCATGCCTTATGCTGTTGAAATGAAAACTAATGATTCTACAGAAGTGTCAACTCGTGCTTCAGCTGAAGGATCTTTCATGGGGGTGGATGATTTTAACAATCTTAAGAGTACCGAGCTAGATGAACTGTCACAACAGGATAAAGTATTGCAGTCAAATATCATGGAAGTAGTGGGTAAAACAGAAAACATGTCTCTTGAAGGATGTAAACAAGATGTCAGTGTTGGTGGAACAGAATTAAAACAAACTAAACAGGGTGATGTAAAGCTAAACACTGAGGCTGTAGCCTTGAGGTCTGCGCAGCCAGGGCAGGATGGATCTACAAGTTGTAGTGCAGGTAGTGATGGGACGGCTGATAATACTTCTTTGGATAGGAAAGATGTTTCCTTGATCAGAAATGACGGTGTAATTAGTAATGAAGGTTTTTCTACAAATTCTGGCACATCAGATCAGCAGTCTGCTGATAGCACTGAAACATCTTCAAAACATTTGAAGGATGATTCAGACAGTACTGGCAGTGGTGCAGTCTCTCTTCCAACATCAGGTACCAAGGACAAGTCGGTTTCGGAGCCTAGTAAGGTGAAACCTACATCAAAGGGTAAGAAGAAAAGGAAAGAAATTCTTCTGAAGGCTGATGCTGCTGGGTCAACATCTGATCTTTATAATGCATACAAGGGACCTGAGGAAAAGAAAGAGTCTGTGATAAGTGCAGAGAAAACAGAAAGTGATTCTGCTTCTGGAAATTTAGAGCCGTTGCCTACCGAGGTTGCACAGTTAGATGATGTAGCAGACAAGCAATCTAAGCAGAATAAAGCTGAACTTGATGATTGGGAGGATGCTGCTGACATGTCTACGCCAAAACTTGAAGTTTTAGATGAAACTGAACATTTTATTGAAGGAATTGCAGTTACTGGCAAAAAGTATTCTAGAGATTTCCTTTTGAAATTTTCAGAGCAATGCACGGACCTTCCTGAAGGGTTTGAAATCACGGCTGACATAGCTGAGGTTTTGATGAGTCCTAATTTTAGTTCTCATGTAACTGAACGCGATTCACCTTCTAGTGGAAGAATTATTGATAGGTCAGGCAGCATGTCTCGTCGTGGGAGTGGTATTATTGAGGAAGACAAATGGAGTAAAGGTTCCAATGCATATCATTCTGGTATGCGTTTGGATGGTGTTGGTGGTAATGCAGGATTTCGTACTGGCCAAGGAGGCAATTTTGGTGTTTTAAGGAATCCGCGCTCACAGACACCTGTGCAATATGCTGGAGGGATTCTTTCTGGTCCAATGCAATCCATGGTAAATCAGGGAGGAATGCAAAAAAATAGCCCTGATGGAGAAAGGTGGCAGCGTGCTACAAGCTTCCAGCAGAGGGGTTTGATTCCTTCTCCTCAAACTCCTTTACAGATGATGCACAAAGCTGAGAAAAAGTATGAGGTGGGTAAAGTGACGGATGAGGAAGAGGCGAAGCAGAGGCAGTTGAAGGGCATATTAAATAAATTAACTCCTCAGAATTTTGAGAAGCTTTTTGATCAGGTCAGAGCAGTTAATATTGACAATGTTGTCACTCTTAATGGTGTCATCTCACAAATCTTTGAGAAGGCCTTGATGGAGCCAACCTTCTGTGAAATGTATGCCAATTTCTGTTTTCATCTGGCTGTTGCATTGCCCGATCTCAGTCAAGACAATGAAAAGATAACTTTTAAGAGACTATTGTTAAATAAGTGCCAAGAAGAATTTGAAAGGGGTGAAAGAGAGCAAGAAGAAGCTAACAAGGCTGATGAAGGTGAGGTCAAGCTGTCTAATGAGGAAAGAGAAGAAAAACGAACCAAGGCAAGGAGACGTATGTTGGGTAATATCAGATTGATTGGAGAACTATATAAGAAGAAAATGTTGACAGAGAGGATAATGCATTCATGCATCACGAAGCTATTGGGTCAGTATCAGGATCCAGATGAAGAAGATATTGAAGCTTTGTGCAAACTGATGAGTACCATTGGGGAGATGATTGACCATCCCAGAGCCAAAGAACATATGGATGCATATTTTGAAATGATGAGATCACTGTCAAACAACATGAATTTATCTTCTAGGGTGAGGTTCATGCTGAAGGATGTAATTGATTTGAGAAAGAATAAATGGCAACAAAGAAGAAAAGTTGAAGGTCCAAAGAAGATTGAGGAGGTTCATAGAGATGCTTCTCAAGAGAGGATGGCCCAAGCTGGTAGGTTGGGTCGTGGTCCAGGCAACAATCCACCTAGACGAATGCCTATGGATTTTGGTCCAAGAGGGTCATCTATGTTATCTCCTAATGCTCAGATGGGTGGACTTCGTGGATTGCCTTCTCAAGCTCGTGGTTATGGTTCCCAGGATGCCCGTATTGATGAAAGGCAAACTTATGAGGCTAGGACATTGTCAGTTCCCTTACCACAAAGACCTTTAGGTGATGAATCAATAACCTTGGGACCAATGGGTGGTCTTGCCAGAGGAATGTCCATTAGAGGTCCACCTGCAGTTTCAAGTTCAACCGGTCTTAATGGTTATAATAATTTTTCAGAGCGCACTTCATACAGCTCTAGGGATGATCCTGCATCAAGATACGCTCCAGATAGATTTTCTGGTTCTACTTATGATCAACCTAGTGTTCAAGATCATAATGTGAATTATGCAAACAGGGACATGAGAAATGCAAATAGGATTCCTGAAAAACCTGTTGTAACTTCGCCACCTGCCAGAACACAAGGGACAGCAGTCTCCCAAAATATTTCTCTGGATCGATTACAGGACATGTCCATGTTAGCAATCAGAGAATACTACAGGTACTACTCTTTCGAGAGAAAGGACACAGAGAGAGATCTTTTGGCCCAGCTGCTTGTCAAGCTTGTGAAATCTCCTGATGGACCCTTGGGTCAAGCTCAGCTCATCAAAGGGTTTGAATCTGTTCTTAGTACTTTGGAAGATGCGGTTAATGATGCCCCCAAAGCACCGGATTTTCTTGGCCGTGTTTTTGCCAAAGCTATAACAGAGCATGTAGTCTCTTTGAACGAGATTGGGCATTTAATACATGAGGGTGGAGAGGAACAGGGGAGCCTATTAGAAGGTGGGCTTGCAGCTGAAGTTCTTGGAAGCATCTTGGAGGTAATAAAAATGGAGAAGGGTGATGCTGTTTTGAGTGACATCTGTGCGAGCTCCAACTTGCGGTTGGAGAGCTTCCGGCCGCCGGAACCTCTTACATCAAGGAAGCCGGAACACCGGGATGATATTTATAAGCTCCCCGTCTCACGGGTTCCTCATTCCTCTAACAATGTAGAAAAAGTTGTTTCCAAATATGAGCTCGAGGCAAAGGATCTTGATCCAATAGTGGAGGATGAAGATCACGTTAAGCCAATAGGGGATACCAAGTCCCTCCAGTGA 5550 0.4402 MSFNQSKSDKSDAVYRKSGRSASFNQQRGSSGGAYGRGGGGGGGAGPSPSLSSNRRVNPALVNSAESNSTYAARTVANGSHLQPQIHVRWYVVEGNYMHIAIGNVRVSDAPVTNATAKPFESSAVQRSTRAVPKAPTSQPPSMSSDPAAPTTPAKADASKAFPFQFGSISPGFMNGMAIPARTSSAPPNIDEQKRDQARHDSFRPAPSLPTPPVPKQQAVKKDTGVTDQSNTGETHTGTRAKKDTQVSPLPPASQMQKPSVIPLTGISMPMPYHQSQASVHFGGPNPQIQSQGMSSAPLQMPLPMPLPIGSATQVQQPVFVPNLQPHPIHPQGIMHQGQSMGFTPQIGPQLSHQLGNMGIGISPQYPPQQGGKFGAPRKATPVKITHPETHEELRLDKRADAYSDGGSSGVRPHSGMASQSQPAQPFAASHPISYYPSSSYSTNSLFYPTASSLPLTSSQITPNSQPPRFNYALSHGPQNVSFVNSSSHSSVPVNKAGTPIAGNAEPPNPEFSRDVHSAILSAPSGVTSVSIKPSGGPGVADSLANSSIQKSVSPSSALTSGDAFSSAQLKGSEIAEISSQQSKFSTDSSVVNSFPNLSSAKPASASLLLSTSAVSEDSVSVIPNNEGRKKESVSRSNSLKDNQKKIQKKGPSQHQGAVQSAPVVNVPSQAVDGGIPDDVSETTGTGANDSVVITSENISTANSDLLSATSGSMPYAVEMKTNDSTEVSTRASAEGSFMGVDDFNNLKSTELDELSQQDKVLQSNIMEVVGKTENMSLEGCKQDVSVGGTELKQTKQGDVKLNTEAVALRSAQPGQDGSTSCSAGSDGTADNTSLDRKDVSLIRNDGVISNEGFSTNSGTSDQQSADSTETSSKHLKDDSDSTGSGAVSLPTSGTKDKSVSEPSKVKPTSKGKKKRKEILLKADAAGSTSDLYNAYKGPEEKKESVISAEKTESDSASGNLEPLPTEVAQLDDVADKQSKQNKAELDDWEDAADMSTPKLEVLDETEHFIEGIAVTGKKYSRDFLLKFSEQCTDLPEGFEITADIAEVLMSPNFSSHVTERDSPSSGRIIDRSGSMSRRGSGIIEEDKWSKGSNAYHSGMRLDGVGGNAGFRTGQGGNFGVLRNPRSQTPVQYAGGILSGPMQSMVNQGGMQKNSPDGERWQRATSFQQRGLIPSPQTPLQMMHKAEKKYEVGKVTDEEEAKQRQLKGILNKLTPQNFEKLFDQVRAVNIDNVVTLNGVISQIFEKALMEPTFCEMYANFCFHLAVALPDLSQDNEKITFKRLLLNKCQEEFERGEREQEEANKADEGEVKLSNEEREEKRTKARRRMLGNIRLIGELYKKKMLTERIMHSCITKLLGQYQDPDEEDIEALCKLMSTIGEMIDHPRAKEHMDAYFEMMRSLSNNMNLSSRVRFMLKDVIDLRKNKWQQRRKVEGPKKIEEVHRDASQERMAQAGRLGRGPGNNPPRRMPMDFGPRGSSMLSPNAQMGGLRGLPSQARGYGSQDARIDERQTYEARTLSVPLPQRPLGDESITLGPMGGLARGMSIRGPPAVSSSTGLNGYNNFSERTSYSSRDDPASRYAPDRFSGSTYDQPSVQDHNVNYANRDMRNANRIPEKPVVTSPPARTQGTAVSQNISLDRLQDMSMLAIREYYRYYSFERKDTERDLLAQLLVKLVKSPDGPLGQAQLIKGFESVLSTLEDAVNDAPKAPDFLGRVFAKAITEHVVSLNEIGHLIHEGGEEQGSLLEGGLAAEVLGSILEVIKMEKGDAVLSDICASSNLRLESFRPPEPLTSRKPEHRDDIYKLPVSRVPHSSNNVEKVVSKYELEAKDLDPIVEDEDHVKPIGDTKSLQ 1849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03898 1849 MobiDBLite consensus disorder prediction 1491 1516 - -
Vimu6g03898 1849 MobiDBLite consensus disorder prediction 1430 1449 - -
Vimu6g03898 1849 Coils Coil 1285 1305 - -
Vimu6g03898 1849 MobiDBLite consensus disorder prediction 629 649 - -
Vimu6g03898 1849 MobiDBLite consensus disorder prediction 1056 1072 - -
Vimu6g03898 1849 Pfam MIF4G domain 1203 1425 IPR003890 GO:0003723|GO:0005515
Vimu6g03898 1849 MobiDBLite consensus disorder prediction 619 688 - -
Vimu6g03898 1849 MobiDBLite consensus disorder prediction 848 870 - -
Vimu6g03898 1849 MobiDBLite consensus disorder prediction 118 156 - -
Vimu6g03898 1849 Gene3D - 1203 1438 - -
Vimu6g03898 1849 MobiDBLite consensus disorder prediction 1548 1574 - -
Vimu6g03898 1849 SMART if4_15 1203 1425 IPR003890 GO:0003723|GO:0005515
Vimu6g03898 1849 MobiDBLite consensus disorder prediction 650 667 - -
Vimu6g03898 1849 MobiDBLite consensus disorder prediction 118 149 - -
Vimu6g03898 1849 SUPERFAMILY ARM repeat 1197 1427 IPR016024 -
Vimu6g03898 1849 ProSiteProfiles MI domain profile. 1609 1734 IPR003891 -
Vimu6g03898 1849 MobiDBLite consensus disorder prediction 1056 1080 - -
Vimu6g03898 1849 MobiDBLite consensus disorder prediction 222 258 - -
Vimu6g03898 1849 SUPERFAMILY ARM repeat 1634 1788 IPR016024 -
Vimu6g03898 1849 MobiDBLite consensus disorder prediction 810 831 - -
Vimu6g03898 1849 FunFam Eukaryotic translation initiation factor 4G 1203 1438 - -
Vimu6g03898 1849 Gene3D - 1642 1801 - -
Vimu6g03898 1849 MobiDBLite consensus disorder prediction 18 32 - -
Vimu6g03898 1849 MobiDBLite consensus disorder prediction 882 899 - -
Vimu6g03898 1849 MobiDBLite consensus disorder prediction 401 425 - -
Vimu6g03898 1849 MobiDBLite consensus disorder prediction 1544 1596 - -
Vimu6g03898 1849 MobiDBLite consensus disorder prediction 1 56 - -
Vimu6g03898 1849 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 360 1789 IPR045208 GO:0003743
Vimu6g03898 1849 MobiDBLite consensus disorder prediction 936 950 - -
Vimu6g03898 1849 FunFam Eukaryotic translation initiation factor 4G 1652 1796 - -
Vimu6g03898 1849 MobiDBLite consensus disorder prediction 1430 1470 - -
Vimu6g03898 1849 MobiDBLite consensus disorder prediction 175 258 - -
Vimu6g03898 1849 MobiDBLite consensus disorder prediction 810 963 - -
Vimu6g03898 1849 MobiDBLite consensus disorder prediction 1294 1323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03898 Vimu-Chr6 38197535 38207450 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03898 1 1792 Eukaryotic Initiation Factors Gene Family AT3G60240 43.309 0.0 1188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03898 K03260 - gmx:100796636 2675.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03898 6 38197535 38207450 Vimu6g03898 6 38197535 38207450 ECH
Vimu9g00542 9 6461822 6462780 Vimu6g03898 6 38197535 38207450 PCT