Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03883 ATGTCGCAACAACATAGCTCAAGGCAAGCCAAGAAGGCCGAGAAACCATACTCCATTAACTACAGAAGTGGGTCTCCGAATCTCACTGTTGTTTGTTTATCAAGAAAAAGAGTGTGTCTAAAAATGGTTAGGAATCAGAAAAGTGTACTAGCTATGGTTAGCCAGGAGAGAAAGAAGAAGATGAGAAACGGGTCTCATGGGTTTGGGTCCATTTTCATGCATGCCGATGGTAAAGATTTGTTTTTTATGATTTTAGGTACAGTTGGGGCTGTTGGGGAAGGCTTTGCCACCCCTCTAGTGTTGTTTATCAGTAGTCGTATGATGAATAACATTGGGGGTTCATCCAACATGAAAGGGAACACCTTCATCCATAACATCGACAAGAATGCAGTGGCGTGGTTATATTTAGCTCTCGCCTCTTTTGCCGTTTGCTTCCTCGGTGAGTTTTGGTTCGGCAATGATTTTGCTTTTCCTTTTTCTCTTTCCGGTTACTGTTGGACGAGAACAAGCGAAAGACAGGCAGCGAGAATGAGATTCAGGTATCTGAAAGCAGTGCTTCGACAAGATATCGCGTACTTCGATATGCATGTCACAAGCACGTCAGAGATTATTACCAGCGTCTCCAACGACAGCCTTGTAATTCAAGATGTTCTCAGTGAAAAGGTTCCGAATTTCTTGATGAACATTTCGTTGTTCGTTGGGAGCTACATAGCAGCGTTTGCAATGTTGTGGAGGCTGGCCATTGTGGGGTTTCCTTTTGTGGTTCTTCTGGTGATCCCGGGTTTAATTTACGGCAAGACCTTGTTGGGGTTGTCTAGTAAAATCAGAGATGAGTATAATGAAGCAGGAACAGTTGTGGAACAAGCAATTTCATCAATAAGAACGGTATATTCCTTCGTTGGGGAAAGCCAGACCTTGAACACTTTCTCAAACGCGCTTCAAGGGACGGTGAAGTTGGGCCTGAAGCAAGGCTGGGCCAAAGGCTTAGCCATTGGTAGCAACGGCGTCGTTTTTGCCATTTGGTCTTTCATGTGCTATTACGGCAGCAGACTTGTTATTTATCATGGCGTCAAAGGAGGGACAGTTTTCGCAGTTGGAGCAGCAATCGCGGTTGGTGGATTGGGACTGGGAGCGGCTTTATCGAATGTGAAGTTCTTTTCCGAGGCGGGTGCGGCGGCGGAGCGTATAAAGGAGGTGATAAAGAGGGTTCCGACTATTGATTCTGAGAGCGAGGAAGGGGAGATTCTGGAGAGAGTTTACGGGGAAGTTGAATTTGACAGGGTGGAATTTGCGTACCCGTCGAGACCAGAGAGTGCAGTATTGAACGGGTTGAGTGTGAGAATTCCGGCAGGGAAGAGAGTGGCGTTGGTTGGGGAGAGTGGGTCGGGGAAGTCGACGGTGATAGCACTTTTGCAGAGGTTCTATGACCCAGTGGGAGGAGAGGTGCGTTTGGATGGGGTAGGGATTCAGAAGTTGCAGGTCAAGTGGATGCGTTCCCAGATGGGGTTGGTGAGCCAGGAGCCTGCTCTGTTCGCGACAACCATTAAAGAGAACATACTTTTCGGCAGAGAGGATGCTACGGATGACCAAGTTGTTGAGGCTGCAAAGGCTGCGCATGCTCATGATTTCATCTCGCTTCTGCCTCACGGTTACCAAACACAGGTGGGAGAGAGGGGAGTTCAGATGTCCGGGGGACAGAAACAGAGGATAGCGATAGCGAGGGCAATAATCAAGAAACCGCGAATTCTACTTTTGGACGAAGCAACAAGCGCGCTAGACACAGAATCCGAGCATCTCGTCCAACAGGCACTGGACAACGCCGCCGCGGGTTGCACCGCTATCATCATCGCCCACCGTTTATCCACTATCCAGAACGCAGACCTCATCGTCGTCGTCGCGGGCGGAAAGGTCATAGAGATGGGCTCGCACGACGAGCTCCTCGAAAACGACACCAGCGCCTACGCCTCCTCTTTCCGCCTCCAGCAACAAACGCAGAAAGCGAAAGTAGCCGAAAGCGAGGAAAACGTTGCTCCAGGGAGTGCCACGAGCACGACATCAACGACAGACATGGAAGACGCACTCCCTGTGGGGCCATTTGGAGGGAGTGGTACGGACGTGGCGGAAGGGAAGAAGGTACCAGCGCCGTCGTTTCACAGATTGGTATCCCTGAGTGCCCCCGAGTGGAAACACGTGGTTATGGGGTGCTTAAACGCGATGGTGTTCGGTGCCGTTCAGCCAGTTTACGCATTCACTATGGGGTCCACGATACTGATGTATTTTCACGCGGATCATGAGGAGATAGTGAGGAAGACTAGGATCTACTCGTTCGCCTTTCTGGGCCTCTTTGTGGTGTCTTTCATTGCAAATGTTGGGCAGCATTATTGTTTCGCCTACATGGGGGAATACTTGACCAAAAGGGTCAGACAGACCGTGCTTTCCAAAATCCTCACTTTCGAAATTGGATGGTTTGATCTGGACGAAAACTCCAGTGGCGCCATCTGTTCCCGGCTTGCCAAAGACGCCAATGTGGATTATGAGGCTTTGAAGGTGGAATTGTGGCTCCTGTCACAACAGAGGAAAGTTATTGTTGGTAGTTTGGCAGCTTCGTACAAGATCTTCGTAGTGGTTAGTGTGGTTGTGATTGAATCCTTGACTAGTGTAAGGTCTCTAGTGGGAGATAGAATGGCATTGCTGGTACAGACATTTTCAGCGGTGATAACAGCCTACACAATGGGTCTGATAATTTCCTGGAAGCTTTCCATTGTTATGATAGCGGTACAACCTATCATCATAGGTTGCTTTTACACAAGACGTGTCCTTCTCAAGAGCATGTCCAACATGTCCATGAAGGCCCAGCAACAAAGCAGCAAACTGGCATCAGAAGCGGTTTCCAATCTCCGAACCGTCACAGCCTTTTCTTCGCAGGACCGGATTCTCAAAATGCTTGAAGCGTCCCAAGAGGGCCCAAGCAGAGAGAACATTCGGCAGTCGTGGTTTGCTGGCATTGGGCTTGGATTCTCCCAAGGCCTTGCATCTTGCGTTTGGGCCCTAGACTTTTGGTACGGTGGCAGGCTCATCTCGTACGGGCACATAACAACAAAAGCGTTCTTCGAGAGCTTCATGGTTTTGGTGAGCACTGGGAGGATAATTGCGGATGCGGGAAGCATGACAACGGATCTTGCTAGAGGTGCTGATGTTGTGGCCTCTACTTTTGGCATCATAGATAGGAGTACAAAAATAGAGCCTGATGACCCAAACGGGTACAAGGCAGAGAAGTTGGTTGGTGAAATAGAGTTTCATGAGGTGCATTTTTGGTACCCTACAAGGCCTGACGTGGCTATCTTCCAGGGGTTCTCGATGAAAATGGAGGCAGGGAAATCAACAGCGTTGGTGGGGCAAAGTGGATCTGGAAAATCAACGATCATAGGGCTAATAGAGAGATTTTACGATCCACTTAGAGGGATGGTGACAATAGATGGAATGGACATAAGAAGGTATAACCTAAAGTCACTAAGGAAGCACATAGCACTTGTGAGCCAGGAGCCAACGTTGTTTGGTGGGACCATAAGAGAGAACATTACATATGGAAGAGGTGGGAGGGTTGATGAGAGTGAGATGATAGAGGCAGCACGAGCAGCGAACGCTCATGATTTCATAGCGGGTCTGAAGGAAGGGTACGAGACATGGTGTGGGGAAAAAGGGGTACAACTTTCAGGGGGTCAAAAGCAAAGGATAGCAATAGCGAGGGCCATATTGAAAAACCCTAAGGTGTTGCTGTTGGACGAGGCCACAAGTGCATTGGATGGTCAATCAGAGAAGGTGGTGCAAGATACGTTGATGAGGGTAATGATAGGGAGGACCAGCGTGGTGGTGGCACACAGGTTGAGCACCATTCACCATTGTGATGCTATTGCTGTGATGGAAAAGGGCAGGGTGGTGGAAACTGGAACCCACTCCTCCTTGTTGGCCAAAGGACCATGTGGAGCTTATTACTCTTTGGTGAGCCTTCAGACTAGACATGCAGCCACACTCAACAACACTAGTACTAAAGCTACCCACCCTGTCACTTGA 4071 0.4903 MSQQHSSRQAKKAEKPYSINYRSGSPNLTVVCLSRKRVCLKMVRNQKSVLAMVSQERKKKMRNGSHGFGSIFMHADGKDLFFMILGTVGAVGEGFATPLVLFISSRMMNNIGGSSNMKGNTFIHNIDKNAVAWLYLALASFAVCFLGEFWFGNDFAFPFSLSGYCWTRTSERQAARMRFRYLKAVLRQDIAYFDMHVTSTSEIITSVSNDSLVIQDVLSEKVPNFLMNISLFVGSYIAAFAMLWRLAIVGFPFVVLLVIPGLIYGKTLLGLSSKIRDEYNEAGTVVEQAISSIRTVYSFVGESQTLNTFSNALQGTVKLGLKQGWAKGLAIGSNGVVFAIWSFMCYYGSRLVIYHGVKGGTVFAVGAAIAVGGLGLGAALSNVKFFSEAGAAAERIKEVIKRVPTIDSESEEGEILERVYGEVEFDRVEFAYPSRPESAVLNGLSVRIPAGKRVALVGESGSGKSTVIALLQRFYDPVGGEVRLDGVGIQKLQVKWMRSQMGLVSQEPALFATTIKENILFGREDATDDQVVEAAKAAHAHDFISLLPHGYQTQVGERGVQMSGGQKQRIAIARAIIKKPRILLLDEATSALDTESEHLVQQALDNAAAGCTAIIIAHRLSTIQNADLIVVVAGGKVIEMGSHDELLENDTSAYASSFRLQQQTQKAKVAESEENVAPGSATSTTSTTDMEDALPVGPFGGSGTDVAEGKKVPAPSFHRLVSLSAPEWKHVVMGCLNAMVFGAVQPVYAFTMGSTILMYFHADHEEIVRKTRIYSFAFLGLFVVSFIANVGQHYCFAYMGEYLTKRVRQTVLSKILTFEIGWFDLDENSSGAICSRLAKDANVDYEALKVELWLLSQQRKVIVGSLAASYKIFVVVSVVVIESLTSVRSLVGDRMALLVQTFSAVITAYTMGLIISWKLSIVMIAVQPIIIGCFYTRRVLLKSMSNMSMKAQQQSSKLASEAVSNLRTVTAFSSQDRILKMLEASQEGPSRENIRQSWFAGIGLGFSQGLASCVWALDFWYGGRLISYGHITTKAFFESFMVLVSTGRIIADAGSMTTDLARGADVVASTFGIIDRSTKIEPDDPNGYKAEKLVGEIEFHEVHFWYPTRPDVAIFQGFSMKMEAGKSTALVGQSGSGKSTIIGLIERFYDPLRGMVTIDGMDIRRYNLKSLRKHIALVSQEPTLFGGTIRENITYGRGGRVDESEMIEAARAANAHDFIAGLKEGYETWCGEKGVQLSGGQKQRIAIARAILKNPKVLLLDEATSALDGQSEKVVQDTLMRVMIGRTSVVVAHRLSTIHHCDAIAVMEKGRVVETGTHSSLLAKGPCGAYYSLVSLQTRHAATLNNTSTKATHPVT 1356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03883 1356 Gene3D ABC transporter type 1, transmembrane domain 885 1063 IPR036640 GO:0005524|GO:0016020
Vimu6g03883 1356 FunFam ABC transporter B family member 4 413 668 - -
Vimu6g03883 1356 SUPERFAMILY ABC transporter transmembrane region 882 1082 IPR036640 GO:0005524|GO:0016020
Vimu6g03883 1356 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 738 1062 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g03883 1356 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1097 1334 IPR003439 GO:0005524
Vimu6g03883 1356 Gene3D ABC transporter type 1, transmembrane domain 1067 1341 IPR036640 GO:0005524|GO:0016020
Vimu6g03883 1356 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 423 659 IPR003439 GO:0005524
Vimu6g03883 1356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1087 1337 IPR027417 -
Vimu6g03883 1356 Pfam ABC transporter 1116 1265 IPR003439 GO:0005524
Vimu6g03883 1356 CDD ABC_MTABC3_MDL1_MDL2 1097 1337 - -
Vimu6g03883 1356 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 396 - -
Vimu6g03883 1356 CDD ABC_MTABC3_MDL1_MDL2 423 661 - -
Vimu6g03883 1356 Gene3D ABC transporter type 1, transmembrane domain 161 871 IPR036640 GO:0005524|GO:0016020
Vimu6g03883 1356 SMART AAA_5 450 644 IPR003593 GO:0016887
Vimu6g03883 1356 SMART AAA_5 1124 1311 IPR003593 GO:0016887
Vimu6g03883 1356 Pfam ABC transporter 441 590 IPR003439 GO:0005524
Vimu6g03883 1356 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 388 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g03883 1356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 661 IPR027417 -
Vimu6g03883 1356 Gene3D - 1087 1338 IPR027417 -
Vimu6g03883 1356 MobiDBLite consensus disorder prediction 668 691 - -
Vimu6g03883 1356 SUPERFAMILY ABC transporter transmembrane region 718 879 IPR036640 GO:0005524|GO:0016020
Vimu6g03883 1356 CDD ABC_6TM_Pgp_ABCB1_D2_like 722 1080 - -
Vimu6g03883 1356 ProSitePatterns ABC transporters family signature. 562 576 IPR017871 GO:0005524|GO:0016887
Vimu6g03883 1356 Pfam ABC transporter transmembrane region 884 1045 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g03883 1356 Pfam ABC transporter transmembrane region 83 366 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g03883 1356 Pfam ABC transporter transmembrane region 732 842 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g03883 1356 PANTHER ABC TRANSPORTER B FAMILY 54 783 IPR039421 -
Vimu6g03883 1356 ProSitePatterns ABC transporters family signature. 1237 1251 IPR017871 GO:0005524|GO:0016887
Vimu6g03883 1356 Gene3D - 421 675 IPR027417 -
Vimu6g03883 1356 SUPERFAMILY ABC transporter transmembrane region 77 407 IPR036640 GO:0005524|GO:0016020
Vimu6g03883 1356 FunFam ABC transporter B family member 4 1087 1344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03883 Vimu-Chr6 37868505 37875716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03883 82 665 Calmodulin-binding Proteins AT2G36910 36.717 1.51e-100 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03883 K05658 - gmx:100809399 1998.79