Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03880 ATGGAGGGAAAAATCAACGTGCTAGAGGGAAGGATGGTAGGAAGAATGAGTGCGCTGGAAAGAAGGTTTGACTCAATGGAGACGACAGTGGAGGAATTAAAGACTTTTATGGATTTTGTGGTGGTGGATTCGGACAAGGCAAATGAAACTGAGCGTAGCTGTCTAGAAGAGAGTACAAGTATATTTAAAGGAGTTGAAATCCAAGAGCCTTATGTGGGCATGGAATTTGATTCCGAAGTAGCTGCTAGAAAATTTTATGTTGATTATGCCAGACGGGTTGGATTTGTTGTACGCATAATGCAAAGGCGACGTTCTGGAATTGATGGGAAGACTCTTGCTCGCCGACTTGGATGTAACAAACAAGGATTCTCACCAAATACCAAGGGGGCATTCGGACCAGAGAAAAAGCCAAGACCTAGTGCCCGTGAAGGTTGCAAGGCAACTATCTTGGTAAAGTTAGAAAAATCTGGAAAATGGGTTGTCACCAGATTTATAAAGGATCACAACCATCCTCTAATTGCTACTGCTAATGGATTCGGCACAGTGGGTGATAAAGATAAGAAAATTTCAGAACTTACAATGGAGTTGGAACGCCAAGATCAACTTTGTGTTGCATATCGAGAAAAACTGCTGAGCTTCATAAACAATGTTGAGGAGGAGACACGTGAACTATCCACAAAAGTTCAACTCGTTGTTGAAAATGTAAGGAGAGCTGAATCAGAATTGAAAAAATGTTCACAGAACGTAAAGCCTTGCTCGAAAGAGGACAGGGAAAGATGTGAGTACCATACACCTGTTGCGTTATGCAAGGATTACTGA 819 0.4188 MEGKINVLEGRMVGRMSALERRFDSMETTVEELKTFMDFVVVDSDKANETERSCLEESTSIFKGVEIQEPYVGMEFDSEVAARKFYVDYARRVGFVVRIMQRRRSGIDGKTLARRLGCNKQGFSPNTKGAFGPEKKPRPSAREGCKATILVKLEKSGKWVVTRFIKDHNHPLIATANGFGTVGDKDKKISELTMELERQDQLCVAYREKLLSFINNVEEETRELSTKVQLVVENVRRAESELKKCSQNVKPCSKEDRERCEYHTPVALCKDY 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03880 272 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 27 237 - -
Vimu6g03880 272 Pfam FAR1 DNA-binding domain 84 173 IPR004330 -
Vimu6g03880 272 Coils Coil 228 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03880 Vimu-Chr6 37816683 37824413 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu6g03880 FAR1 1.6e-28 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03880 - - var:108329488 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03880 6 37816683 37824413 Vimu9g01492 9 24078362 24080474 PCT