Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03871 ATGTGCAGCAAGAACACTCCTTCTTCTCCAAACATTCAAACAACCTCTATTATGAAGAGGACACGGAAACCGACCAAACGATATCACTCTTCTTCCTCCTCCTCTTCCTCTTCTTCCTCGCTTAAGCCGCACCGCCGCGGGAACCGGACCAAGACGCGGAGGCCAAAGTTTGTCAGCCTGCGTCTTCAGCTATCCGAGCCCGAGAACATGGGCTCCCAGCCCAAGCCCAAGCCCAAGGCCCTACAGCAGCCGCAGCTCAATCTCTTCCCTCTGCATCCGGAGCACCATGACATGCACGAGGAGCAGAACGTGGCTCTGCTCTTCAGCGCGGAGGGCGGGGCAACGTTGACGGGGCTGCTAGAGGAGGACTCAATGTCGCCGTCCTCGGCGACTACAGAGGGGTCGCTGTCGGCGCTGACGTGTCCGGAGGAGGACGCCGGGAATTGGCTTGTGAGGAAGGCGATGCGGCGGAGGGAGAGCGAGGAGGGGAGCGAGGAACGGTGGGTGTGCTATTCGGAGGTGGTGGAGGAGAAGAAGGAGACGATGGAGGAGGTGACGAGTTATTGCATGATGGGGGCGGCGACGACGACGACGGCGACGACAACGTCCTTTGGATTGTTGTCCTTGAAGCTGGATCACCAAGGGATATTGAATGCTTGGTCTGATAAAGGCTCGCTATACGTGGCGGGGGAGGGAGGTCCACACATTGTCCCTGACTTCCTCAATGGTTTCCTCCTTCATAATGCGTTCCTCCCCCATGTTGCATGGGATGGTTGGGGGAATGGTGTGGTTGGGAACACATGGAATGTTACTGAAGATTGCGGGGGTAACAAGACGAATGTGAAGGAAGAAAATGGTTGGAAGTTGGGGCAGAGAGAGGCAAGTGTTCAGAGATACAAGGAGAAGAGGCAAAGCAGACTATTCTCTAAGAAGATCCGTTATGAAGTTCGCAAGCTCAATGCTGAAAAACGGCCCCGGATGAAGGTACTATTCCCTACACTCATTTTTATATTGTCTTAG 1020 0.549 MCSKNTPSSPNIQTTSIMKRTRKPTKRYHSSSSSSSSSSSLKPHRRGNRTKTRRPKFVSLRLQLSEPENMGSQPKPKPKALQQPQLNLFPLHPEHHDMHEEQNVALLFSAEGGATLTGLLEEDSMSPSSATTEGSLSALTCPEEDAGNWLVRKAMRRRESEEGSEERWVCYSEVVEEKKETMEEVTSYCMMGAATTTTATTTSFGLLSLKLDHQGILNAWSDKGSLYVAGEGGPHIVPDFLNGFLLHNAFLPHVAWDGWGNGVVGNTWNVTEDCGGNKTNVKEENGWKLGQREASVQRYKEKRQSRLFSKKIRYEVRKLNAEKRPRMKVLFPTLIFILS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03871 339 MobiDBLite consensus disorder prediction 65 80 - -
Vimu6g03871 339 Pfam CCT motif 292 331 IPR010402 GO:0005515
Vimu6g03871 339 ProSiteProfiles CCT domain profile. 292 334 IPR010402 GO:0005515
Vimu6g03871 339 MobiDBLite consensus disorder prediction 1 80 - -
Vimu6g03871 339 MobiDBLite consensus disorder prediction 28 43 - -
Vimu6g03871 339 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 15 331 - -
Vimu6g03871 339 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03871 Vimu-Chr6 37658211 37659493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03871 207 331 C2C2-CO-like Transcription Factor Family AT1G73870 44.000 2.09e-19 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu6g03871 CCT 1.2e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03871 - - gmx:100798231 448.358