Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03867 ATGGTTTCGCTGAAACTGCAGAAGCGCCTCGCTGCAAGTGTTCTCAAGTGCGGCAGAGGAAAGGTTTGGCTTGACCCCAATGAAGTCAACGAAATCTCCATGGCCAATTCTCGCCAAAACATAAGGAAGCTGGTTAAAGATGGATTTATTATCAGGAAGCCCACCAAGATTCACTCTCGCTCACGTGCCCGTCGAATGAAGGAAGCTAAGAGAAAAGGACGTCACTCTGGATATGGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCCACTAAAATCCTTTGGATGAGGAGAATGCGTGTGCTCAGACGCTTGCTTCGCAAGTACCGGGAGTCGAAGAAGATTGATAAGCATATGTACCATGACATGTACCAAAAGGTTAAGGGTAATGTTTTCAAGAACAAGAGGGTTTTGATGGAGAGCATACATAAGTCGAAAGCAGAGAAGGCAAGAGAGAAGACTTTGTCTGATCAGTTTGAGGCGAAACGTGCCAAGAACAAGGCCAGCAGAGAAAGGAAAATTGCCCGGAGGGAGGAGCGATTGGCCCAAGGTCCAGGGGAAAAGCCTGCAGCTACAGCGTCGCAGCCTGCTCAAGCACAAAAGAAATCCAAGAAGTGA 618 0.4838 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYQKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPGEKPAATASQPAQAQKKSKK 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03867 205 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Vimu6g03867 205 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Vimu6g03867 205 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Vimu6g03867 205 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Vimu6g03867 205 FunFam Ribosomal protein L19 57 195 - -
Vimu6g03867 205 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Vimu6g03867 205 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Vimu6g03867 205 MobiDBLite consensus disorder prediction 57 85 - -
Vimu6g03867 205 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Vimu6g03867 205 FunFam Ribosomal protein L19 1 56 - -
Vimu6g03867 205 PANTHER 60S RIBOSOMAL PROTEIN L19 1 188 IPR039547 GO:0003723|GO:0003735|GO:0022625
Vimu6g03867 205 MobiDBLite consensus disorder prediction 149 205 - -
Vimu6g03867 205 MobiDBLite consensus disorder prediction 149 184 - -
Vimu6g03867 205 Gene3D - 57 202 - -
Vimu6g03867 205 MobiDBLite consensus disorder prediction 57 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03867 Vimu-Chr6 37609261 37612105 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03867 1 205 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 85.167 2.68e-127 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03867 K02885 - gmx:100527501 357.066