Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03865 ATGATCTTTTTGCTGACTGTGAGTAATTCTGCTACTTGCTATACTTGTTTGTTCCACATCTTTAGGGGAAGCAGAATGGGATCTGTCACTGAGGTTCACTCAGTGGTGGAGTTCAGTCTGGATGCAAAGTGGCTTATAGATCCAAAGCAACTATTTGTTGGGCCAAAAATTGGGGAAGGTGCCCATGCCAAAGTGTACGAAGGAAAATATAAAAATCAGAATGTTGCTGTTAAGATTATTAATAAGGGTGAAACCCCAGAACAGATTTCTAGGAGAGAGGCTCGGTTTGGCAGAGAAATTGCAATGTTATCTAGAGTTCAACACAAAAATCTAGTTAAGGGGGAACATTGCGCAAATACCTGTGGGGTATCCGTCCAAACTGCTTGGATATGCGTGTGGCAGTTGCATTTGCTCTTGATATTGCGCGAGCAATGGAATGCTTACACTCTCATGGGATCATTCATCGTGACCTTAAACCTGATACGACTCCTTAAGTTAAGCTACTTGGAAAGTAATAGGAGTGGAGGCCTTAGATTTATAGGGAAGGCCAAGGTTTGGAGGGTCTATGTTAGGAGGAACACAGAAGGAAAGAGGGGGGTTGACATGGCAGTAGATAACTTGATCTTGACAGAAGATCATAAAACTGTTAAACTTGCCGATTTTGGTCTAGCCAGAGAAGAGTCCTTAGCAGAGATGATGACTGCTGAGACAGGGACATATCGTTGGATGGCTCCAGAACTTTACAGCACTGTCACTCTAAGACAAGGGGAGAAGAAACATTACAACCATAAGGTGGATGTCTACAGTTTTGCTATAGTCCTTTGGGAGCTCATCCATAATAGGTTGCCTTTTGAAGGCATGTCAAATCTACAGGCTGCATATGCAGCTGCATTTAAGAGTACAAGGCCGAGCGCTGAAGACCTCCCTGATGAATTGGCTCTGATTGTGACCTCTTGTTGGAAAGAGGAACCAAATGATCGACCCAACTTTAGTCAAATAATACAGATGTTGCTTCGATATCTAATTACCATTTCCCCGGCCGATCCAGTTGTTCCAATGCGTATTGCATCATCCAAAAATGCTGTATTGCCACCAGAATCTCCAGGTACAAGTGCTTTAATGACTCGAAGAGATGATTCTGGAGAAACCTCGAAAGTTGATACTGAAGGCAGGTCTAAAGGGTGTTTCTTCTGCTTTAATCAATGTTACTGA 1212 0.429 MIFLLTVSNSATCYTCLFHIFRGSRMGSVTEVHSVVEFSLDAKWLIDPKQLFVGPKIGEGAHAKVYEGKYKNQNVAVKIINKGETPEQISRREARFGREIAMLSRVQHKNLVKGEHCANTCGVSVQTAWICVWQLHLLLILREQWNAYTLMGSFIVTLNLIRLLKLSYLESNRSGGLRFIGKAKVWRVYVRRNTEGKRGVDMAVDNLILTEDHKTVKLADFGLAREESLAEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDVYSFAIVLWELIHNRLPFEGMSNLQAAYAAAFKSTRPSAEDLPDELALIVTSCWKEEPNDRPNFSQIIQMLLRYLITISPADPVVPMRIASSKNAVLPPESPGTSALMTRRDDSGETSKVDTEGRSKGCFFCFNQCY 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03865 403 Pfam Protein tyrosine and serine/threonine kinase 54 337 IPR001245 GO:0004672|GO:0006468
Vimu6g03865 403 ProSitePatterns Protein kinases ATP-binding region signature. 57 78 IPR017441 GO:0005524
Vimu6g03865 403 ProSiteProfiles Protein kinase domain profile. 51 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03865 403 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 44 337 - -
Vimu6g03865 403 SUPERFAMILY Protein kinase-like (PK-like) 43 338 IPR011009 -
Vimu6g03865 403 MobiDBLite consensus disorder prediction 361 386 - -
Vimu6g03865 403 Gene3D Phosphorylase Kinase; domain 1 39 131 - -
Vimu6g03865 403 Gene3D Transferase(Phosphotransferase) domain 1 197 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03865 Vimu-Chr6 37582274 37591331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03865 34 403 MAP Kinase Kinase Kinase AT5G50180 58.919 2.82e-151 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vimu6g03865 PK_Tyr_Ser-Thr 2.3e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03865 - - gmx:100808329 494.582