LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu6g03865	ATGATCTTTTTGCTGACTGTGAGTAATTCTGCTACTTGCTATACTTGTTTGTTCCACATCTTTAGGGGAAGCAGAATGGGATCTGTCACTGAGGTTCACTCAGTGGTGGAGTTCAGTCTGGATGCAAAGTGGCTTATAGATCCAAAGCAACTATTTGTTGGGCCAAAAATTGGGGAAGGTGCCCATGCCAAAGTGTACGAAGGAAAATATAAAAATCAGAATGTTGCTGTTAAGATTATTAATAAGGGTGAAACCCCAGAACAGATTTCTAGGAGAGAGGCTCGGTTTGGCAGAGAAATTGCAATGTTATCTAGAGTTCAACACAAAAATCTAGTTAAGGGGGAACATTGCGCAAATACCTGTGGGGTATCCGTCCAAACTGCTTGGATATGCGTGTGGCAGTTGCATTTGCTCTTGATATTGCGCGAGCAATGGAATGCTTACACTCTCATGGGATCATTCATCGTGACCTTAAACCTGATACGACTCCTTAAGTTAAGCTACTTGGAAAGTAATAGGAGTGGAGGCCTTAGATTTATAGGGAAGGCCAAGGTTTGGAGGGTCTATGTTAGGAGGAACACAGAAGGAAAGAGGGGGGTTGACATGGCAGTAGATAACTTGATCTTGACAGAAGATCATAAAACTGTTAAACTTGCCGATTTTGGTCTAGCCAGAGAAGAGTCCTTAGCAGAGATGATGACTGCTGAGACAGGGACATATCGTTGGATGGCTCCAGAACTTTACAGCACTGTCACTCTAAGACAAGGGGAGAAGAAACATTACAACCATAAGGTGGATGTCTACAGTTTTGCTATAGTCCTTTGGGAGCTCATCCATAATAGGTTGCCTTTTGAAGGCATGTCAAATCTACAGGCTGCATATGCAGCTGCATTTAAGAGTACAAGGCCGAGCGCTGAAGACCTCCCTGATGAATTGGCTCTGATTGTGACCTCTTGTTGGAAAGAGGAACCAAATGATCGACCCAACTTTAGTCAAATAATACAGATGTTGCTTCGATATCTAATTACCATTTCCCCGGCCGATCCAGTTGTTCCAATGCGTATTGCATCATCCAAAAATGCTGTATTGCCACCAGAATCTCCAGGTACAAGTGCTTTAATGACTCGAAGAGATGATTCTGGAGAAACCTCGAAAGTTGATACTGAAGGCAGGTCTAAAGGGTGTTTCTTCTGCTTTAATCAATGTTACTGA	1212	0.429	MIFLLTVSNSATCYTCLFHIFRGSRMGSVTEVHSVVEFSLDAKWLIDPKQLFVGPKIGEGAHAKVYEGKYKNQNVAVKIINKGETPEQISRREARFGREIAMLSRVQHKNLVKGEHCANTCGVSVQTAWICVWQLHLLLILREQWNAYTLMGSFIVTLNLIRLLKLSYLESNRSGGLRFIGKAKVWRVYVRRNTEGKRGVDMAVDNLILTEDHKTVKLADFGLAREESLAEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDVYSFAIVLWELIHNRLPFEGMSNLQAAYAAAFKSTRPSAEDLPDELALIVTSCWKEEPNDRPNFSQIIQMLLRYLITISPADPVVPMRIASSKNAVLPPESPGTSALMTRRDDSGETSKVDTEGRSKGCFFCFNQCY	403

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vimu6g03865	403	Pfam	Protein tyrosine and serine/threonine kinase	54	337	IPR001245	GO:0004672\|GO:0006468
Vimu6g03865	403	ProSitePatterns	Protein kinases ATP-binding region signature.	57	78	IPR017441	GO:0005524
Vimu6g03865	403	ProSiteProfiles	Protein kinase domain profile.	51	341	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vimu6g03865	403	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	44	337	-	-
Vimu6g03865	403	SUPERFAMILY	Protein kinase-like (PK-like)	43	338	IPR011009	-
Vimu6g03865	403	MobiDBLite	consensus disorder prediction	361	386	-	-
Vimu6g03865	403	Gene3D	Phosphorylase Kinase; domain 1	39	131	-	-
Vimu6g03865	403	Gene3D	Transferase(Phosphotransferase) domain 1	197	347	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu6g03865	Vimu-Chr6	37582274	37591331	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu6g03865	34	403	MAP Kinase Kinase Kinase	AT5G50180	58.919	2.82e-151	430

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Vimu6g03865		PK_Tyr_Ser-Thr	2.3e-26	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu6g03865	-		-	gmx:100808329	494.582

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