Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03853 ATGACGGGGGGTGTTTTTCAGCTACTGAGGAGGAAACTCCACCCTCAATTTACTAACTCTTCCTTGTTGTCACCCATTATAGCAAAGAAAGATGGTGCTGGCTCTACTGGCAGTAGGTCCTTGAAAGTACTTGCATTAATTGGAGCTGGTGTGTCAGGCTTTTTTAGTTTTTCTACAGTGGCAGTAGCTGATGAAGCTGAGCATGGCCTGGCATGTCCTAGCTATCCATGGCCTCACAAGGGAATTCTTAGTTCATATGACCATGCTTCGATCCGTCGTGGTCATCAAGTTTATACAGAAGTTTGTGCTTCCTGCCATTCTATGTCTTTGATATCATACCGTGATTTGGTTGGTGTTGCTTATACAGAAGAAGAGGTAAAGGCTATGGCTGCTGAGATTGAGGTGGTTGATGGCCCAAATGATGAGGGTGAGATGTTTACTCGCCCTGGTAAACTTAGTGACCGTTTTCCTCAGCCATACGCGAATGAAGCAGCTGCTAGGTTTGCTAATGGAGGAGCTTATCCTCCTGATCTAAGTCTTATTACCAAAGCCCGCCACAATGGTCAGAACTATGTTTTTGCCCTTCTAACTGGTTATCGTGATCCTCCAGCTGGTGTCTCGCATGGTGGTGGTGACTTGGGTTTAATCTGGAGGCACATCACCACTGGCTTGAGCCGTAGTGTAACTCATTCTGCCCTTGTATTGTTGCAAGGAAGAAGCCTCAGACTTTCTCAAAAAAAATGGTTGGGATCAGCCACTATAGCAGCTGCTGTCGGCCACTGGTGTGACCCTGCTTTCGACTTGTTTCACCATTGCCTCTGGCCTATTCTGTTGTCAGCTATATGTTCTGTCGTCATCGCCAATTGCAGTGCCACCCCCTGCCCCATTCTCTTGATGCAGTCCCACCTGACCCAAACTTGCAAGATAAGGGAAGGACTTCATTATAATCCTTACTTTCCGGGTGGAGCAATTGCCATGCCTAAAATGCTTAATGATGGTGCTGTGGAATATGAAGATGGTACCCCTGCTACAGAAGCTCAGATGGGGAAAGATGTTGTGTCATTCCTAAGTTGGGCTGCCGAACCCGAGATGGAAGAGAGGAAACTGATGGGATTTAAATGGATATTTGTACTGTCTCTGGCACTACTTCAGGCTGCCTATTACCGTCGCTTGAGGTGGTCAGTTCTAAAGTCTCGCAAGCTGGTTCTTGATGTTGTCAACTAG 1224 0.4681 MTGGVFQLLRRKLHPQFTNSSLLSPIIAKKDGAGSTGSRSLKVLALIGAGVSGFFSFSTVAVADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYTEVCASCHSMSLISYRDLVGVAYTEEEVKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANEAAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSHGGGDLGLIWRHITTGLSRSVTHSALVLLQGRSLRLSQKKWLGSATIAAAVGHWCDPAFDLFHHCLWPILLSAICSVVIANCSATPCPILLMQSHLTQTCKIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03853 407 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 362 406 IPR021157 -
Vimu6g03853 407 ProSiteProfiles Cytochrome c family profile. 89 196 IPR009056 GO:0009055|GO:0020037
Vimu6g03853 407 Gene3D - 66 362 IPR036909 GO:0009055|GO:0020037
Vimu6g03853 407 SUPERFAMILY Cytochrome c 308 361 IPR036909 GO:0009055|GO:0020037
Vimu6g03853 407 PANTHER CYTOCHROME C1 33 207 IPR002326 GO:0009055|GO:0020037
Vimu6g03853 407 PRINTS Cytochrome C1 signature 173 197 IPR002326 GO:0009055|GO:0020037
Vimu6g03853 407 PRINTS Cytochrome C1 signature 95 114 IPR002326 GO:0009055|GO:0020037
Vimu6g03853 407 PRINTS Cytochrome C1 signature 140 160 IPR002326 GO:0009055|GO:0020037
Vimu6g03853 407 PRINTS Cytochrome C1 signature 75 94 IPR002326 GO:0009055|GO:0020037
Vimu6g03853 407 Gene3D - 363 406 - -
Vimu6g03853 407 FunFam Cytochrome c1, heme protein, mitochondrial 363 407 - -
Vimu6g03853 407 SUPERFAMILY Cytochrome c 70 210 IPR036909 GO:0009055|GO:0020037
Vimu6g03853 407 Pfam Cytochrome C1 family 305 394 IPR002326 GO:0009055|GO:0020037
Vimu6g03853 407 Pfam Cytochrome C1 family 77 210 IPR002326 GO:0009055|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03853 Vimu-Chr6 37410205 37415141 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03853 309 407 Chloroplast and Mitochondria Gene Families AT3G27240 93.939 1.19e-54 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03853 K00413 - gmx:100789781 393.66