Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03843 TTGTCCCACCTATTTTTATTATCTCCTTCTCCTTGGATTAAGGGTTCATTAATTTCTATAACACCTGGGTACGTATCAGCGTGGATTATCCCAGATGGTATTGCAGGTGATCTTGATTCAGTTAACCCGTCTGCTATCTTTAACATGCAAGGAGTTATTGGATTTAAGACACCCTTCTTGGAAACAAGCAAGGCCTTTAGACGGTTCAAGTTAAAATTTCGTAGAAGGTTTGTCTTCGAGTTCCCGGAAGAAGAGAACATTAACCCAAGTTCCTTTGTACTTCAATCGTATAATGCAACCTGGGAAGTTGCTCAAGCTGCAGAGGAATCACAAGGGAAGTTAACCCTTGAACAATTATTAAAAAGTAAAATCTCCATGAATAAAAAATTACGGCAATCATCAACCCTCAGCATAATTAACGTGGTAGGTAAAAGTTACAGAGAGTTGGCATCATGGTCTCCAGCATCAGGTTTCTCCAAAACCCTTGTTACAGAACAGATGACAGAGATGAACACAAACAGTGCTTCAAGTGGAGTTTTGAGTACAGTTTATTGGCCAGGAGGCATACAATTTTTTCCTAAGGGATGGACTCACAACACCAAAGAGAGGACATTACAAATAGGAGTTCCTGCAAATGGTGCATTTACTGATTTCGTGAATGTGGAATATGATATTAAGAGGAACAAAACTTCTTTTACCGGATTCTCAATTGATGTCTTTAAAGCAGCTGTTCAAAGTTTGCCTTATAATTTGAATTTCTCGTTTGTTCCCTTCGATGGATCTTCTGATGAAATGGTAGGCCAAGTCTACAATAAGGTATGCTTAGACATTGTATGCCGCTGTGGAGATACATCAATAATGGCATACAGATATCATTTAGTTGACTTCTCACAACCGTATGTTGAATCTGGCATTGATATGGTGGTTACAGAGCAGTCAGCTAAATCAAAGGAAACATGGCTTTTTTTAGAAGTCTTCACAAAAGAGACGTGGTTAATGATGGCAGCATTACACATTTTGGTGGGACTCGTCATATGGTTGATCGAAAGGCAAGTTAATGCAGAACTAAGAGAATTCGGGTCCATGCTTTGGTTCTTAGTCACCGTAATATTCTTTGCACAGAGAGAACAAATTAGAAGCCCCTTGACTCGAATTGTGCTGGCACCATGGTTATTTGTGATCCTCATTGCAACTAGTACTTTCACAGCAAGTTTGACATCTATGATGACTGTTTCACAACTAGAGCCATCTGTGTTAGATATCCAGACCATTCTGAAAAGAAATTTTGTAGTTGGTTGTAATGGAAATTCGTTCATTTTGAAGTATTTGACTGAGGTACAAAAGTTCAAGCCTGAGAACATTAGGAAAATTAACTCTATAAATGATTACCCTGATGCCTTTTGGAACAAAGATATCGAAGCTGATTTCTTTATTGCACCTCACGCTAAGGTCTTTTTGGCAAAGTACTCATGCAGGGGTTTAATCAAAGCAGGGAAAACTTTCAGGCTTGGCGGCTTGGGTTTTTTGGGTATCTCTCCTTTTATTCTCACCATTTTATGA 1560 0.3885 MSHLFLLSPSPWIKGSLISITPGYVSAWIIPDGIAGDLDSVNPSAIFNMQGVIGFKTPFLETSKAFRRFKLKFRRRFVFEFPEEENINPSSFVLQSYNATWEVAQAAEESQGKLTLEQLLKSKISMNKKLRQSSTLSIINVVGKSYRELASWSPASGFSKTLVTEQMTEMNTNSASSGVLSTVYWPGGIQFFPKGWTHNTKERTLQIGVPANGAFTDFVNVEYDIKRNKTSFTGFSIDVFKAAVQSLPYNLNFSFVPFDGSSDEMVGQVYNKVCLDIVCRCGDTSIMAYRYHLVDFSQPYVESGIDMVVTEQSAKSKETWLFLEVFTKETWLMMAALHILVGLVIWLIERQVNAELREFGSMLWFLVTVIFFAQREQIRSPLTRIVLAPWLFVILIATSTFTASLTSMMTVSQLEPSVLDIQTILKRNFVVGCNGNSFILKYLTEVQKFKPENIRKINSINDYPDAFWNKDIEADFFIAPHAKVFLAKYSCRGLIKAGKTFRLGGLGFLGISPFILTIL 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03843 519 Gene3D - 94 203 - -
Vimu6g03843 519 SUPERFAMILY Periplasmic binding protein-like I 27 187 IPR028082 -
Vimu6g03843 519 FunFam Glutamate receptor 319 452 - -
Vimu6g03843 519 Gene3D - 204 318 - -
Vimu6g03843 519 Gene3D - 319 459 - -
Vimu6g03843 519 SUPERFAMILY Periplasmic binding protein-like II 180 508 - -
Vimu6g03843 519 Pfam Ligand-gated ion channel 328 427 IPR001320 GO:0015276|GO:0016020
Vimu6g03843 519 Pfam Bacterial extracellular solute-binding proteins, family 3 226 318 IPR001638 -
Vimu6g03843 519 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 26 508 IPR015683 -
Vimu6g03843 519 SMART GluR_14 204 432 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03843 Vimu-Chr6 37269929 37274708 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03843 20 508 Ion Channels AT5G11210 31.123 1.88e-74 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03843 - - gmx:100778941 760.755