Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03842 ATGGAGGTACACCAAAGAAAGAAGAAAAGGAGTCGAGGTGAGGTTGCGCGAGAGAACAAGCAAGTGCTTGCCCTCATTGGAACAATAACACACAATGAAGCAACAATTGCAAGTGAGTTAAATGACACCATAAAGAATATTCCTATACTGTCTCTAGCATCCCCCACAGCCAACATGGAGAAGTTATCTCCACAATTGCCACACTTCATCCAATTTGGCAATGATATCAAGATTCATATGCAATGCATTTCAGCCATTGTAGGAGAATTCAGATGGAGAAAGGTGACAACAATCTATGAGCTCAATAACAAGTTTTCCTTTGATCCAGGAATGCTACTTGACCTTTCCTATTCTCTTAGACTTGTTGGCTCTGAGATTGATAATCATTTAGCGTTCCCTTCCTTGTCCTACCTCTCAGACCCAAAATCTACCATTGAAAATGGGCTTAAAAAGCTTAAAAGAAAAAGTAACAGGGTCTTCTTGATTCTGCAATCTTCTTTGGAGATGGCTAACATACTATTTGAAAAAGCAAAACAAATGGGTTTGATGGAAAAAGATTCTGTTTGGGTTATCCCAGATGGGGTTGCTAGCCTTCTTGATTCGGTTAACTCAACTGTTATCTCTAACATGCAAGGAGTTATTGGATTTAAGACACATTTCATTGAAACAAGTGAGAAATTTAGGAGATTCAAGTTTAAATTTCGAAGAAGGTTCGCATTGGAGTTCGCTAAAGAAGATAATATTAGCCCGAGTTTCTTTGCACTACAATCTTATGATGCAACTTCGGTTGTTGCTCAGGCTACAAGGAAATCACAATGGAAGTTTAACCTTGAACAATTATCTAGAACTAATCTCTCCAGCAATAGAAAATTACAACAACCACCAATCTTCAGCATAATTAATGTGATAGGTAAAAGTTTCAGAGAGTTGGGATTATGGTCTCCAGAACTAGGTTTGACAAAAAACCTTGTTATAGAACAACTACCAGAGATAAAGAAGACACGTGGTGCTTCAACTAAAGTTTTGAGTACAATTTATTGGCCAGGTGGCTTGGAGTTTGTTCCTAAGGGATGGACTCACAGCACCGAGGAGAAGTCATTGCAAATAGCAGTGCCTGCAAATGGTGTCTTTCATCAATTTGTAAATGTGACGTATGATCAAAACACAAATAACACTTCTGTTACCGGTTTCTCAATTGATGTCTTCAAAGCAGCCATTAATACTTTGCCTTATGACTTGAAATACACGTTTGTTCCCTTTAATGGTTCTTATGATGAAATGGTAGAGAAAGTCTACAATAAGACATTGGATGCTGCTGTCGGAGATACAGCAATAATGGCGTACAGATATCATTTAGTGGACTTCTCACAACCATATCTTGAATCTGGCCTGAACATGGTGGTTCTAGAGCAATCAAAAAAATCAAAGAAAGCATGGATGTTTTTGGATGCCTTCACGAAAGAGATGTGGTTGATGATGACAACACTGCACATTTTCATTGGATTGGTCATTTGGTTGATTGAGAGACAAGTTAATGCAGAACTAAAAGGATTGGGGTCCATGCTTTGGTTTTTAGTCACTGTAATATTCTATGCACACAGAGAACCAATTAGAAGCCCTTTGGCTCGAACTGTAATGGCACCATGGTTATTCGTTATCCTCATTGCAACAAGTACTTTCACAGCAAGTTTGACTTCCATGATGACTTTTTCACAGCTAGTGCCATCTGTCTTAGATATCAAAACCCTTCAGAAAAGAAATTCCCCGGTTGGTTGTAATGGAAATTCATTCATTGTGAAGTATTTGACTGAGGTACTAAAGTTCAAGCCAGAGAACATCAGAAAAATTTACTCCGTAAGTGATTACCCTAAGGCCTTTCAAAATAAGTATATTGAAGCCGCTTTCCTTAGTACACCTCATACGAAGGTATTTCTGGCAAAGTACTCATGCATGGGTCTCATCAAAGCAGGGAACACTTTCAAGCTTGGTGGCGTAGGTTTTGTGGGTCTCTCATCCTCATTGTTTCCTTTCCATTTTATGATATGTTTGGTACTAGTGGAAAATAGGGTATTTCCAAAGGGTTCCAATCTAGCTACCGACATATCTGAGGCATTGCTGAAAGTGATAGAGAGTGGAGAGATAGAAGAACTAGAAAAAGAGATGTTAGGAGGCAATGCCAGTTGCTCTCCTTTACAAAGCAAAATGAAAGATGGTTCATCGACAGGATTTCAACCTTTCCTTGGCCTATTTTGCATCTGTGCTGTTGTTTCTATTTTAGCATTGTTATATAATATGATTTGTGTGTTCATGAATGATGTAGAGAAATTCACCAACTATATACACGTAACATTGACACCATTGAGGAGAATCTATATATGGACAAGTGCATCTTTTACATGGATTTGTTCAACACTACAATGGGGGAGTATTAGAAGTGTAATTACTACCACAATAACAGGAAATGCAGAGGAGACTACCATTAATAGTCAACAAAGCACCATGGTTGTTGAGGTTACTGATATTGTATTGGCTTCTCATTCTTCCTGA 2547 0.3836 MEVHQRKKKRSRGEVARENKQVLALIGTITHNEATIASELNDTIKNIPILSLASPTANMEKLSPQLPHFIQFGNDIKIHMQCISAIVGEFRWRKVTTIYELNNKFSFDPGMLLDLSYSLRLVGSEIDNHLAFPSLSYLSDPKSTIENGLKKLKRKSNRVFLILQSSLEMANILFEKAKQMGLMEKDSVWVIPDGVASLLDSVNSTVISNMQGVIGFKTHFIETSEKFRRFKFKFRRRFALEFAKEDNISPSFFALQSYDATSVVAQATRKSQWKFNLEQLSRTNLSSNRKLQQPPIFSIINVIGKSFRELGLWSPELGLTKNLVIEQLPEIKKTRGASTKVLSTIYWPGGLEFVPKGWTHSTEEKSLQIAVPANGVFHQFVNVTYDQNTNNTSVTGFSIDVFKAAINTLPYDLKYTFVPFNGSYDEMVEKVYNKTLDAAVGDTAIMAYRYHLVDFSQPYLESGLNMVVLEQSKKSKKAWMFLDAFTKEMWLMMTTLHIFIGLVIWLIERQVNAELKGLGSMLWFLVTVIFYAHREPIRSPLARTVMAPWLFVILIATSTFTASLTSMMTFSQLVPSVLDIKTLQKRNSPVGCNGNSFIVKYLTEVLKFKPENIRKIYSVSDYPKAFQNKYIEAAFLSTPHTKVFLAKYSCMGLIKAGNTFKLGGVGFVGLSSSLFPFHFMICLVLVENRVFPKGSNLATDISEALLKVIESGEIEELEKEMLGGNASCSPLQSKMKDGSSTGFQPFLGLFCICAVVSILALLYNMICVFMNDVEKFTNYIHVTLTPLRRIYIWTSASFTWICSTLQWGSIRSVITTTITGNAEETTINSQQSTMVVEVTDIVLASHSS 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03842 848 SUPERFAMILY Periplasmic binding protein-like I 19 358 IPR028082 -
Vimu6g03842 848 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 28 769 IPR015683 -
Vimu6g03842 848 Gene3D - 266 370 - -
Vimu6g03842 848 Gene3D - 385 461 - -
Vimu6g03842 848 CDD GluR_Plant 365 722 - -
Vimu6g03842 848 Gene3D - 76 247 - -
Vimu6g03842 848 SUPERFAMILY Periplasmic binding protein-like II 341 720 - -
Vimu6g03842 848 FunFam Glutamate receptor 79 248 - -
Vimu6g03842 848 Pfam Receptor family ligand binding region 20 272 IPR001828 -
Vimu6g03842 848 Gene3D - 477 617 - -
Vimu6g03842 848 Gene3D - 462 473 - -
Vimu6g03842 848 SMART GluR_14 366 724 IPR001320 GO:0015276|GO:0016020
Vimu6g03842 848 Pfam Bacterial extracellular solute-binding proteins, family 3 390 646 IPR001638 -
Vimu6g03842 848 FunFam Glutamate receptor 362 477 - -
Vimu6g03842 848 FunFam Glutamate receptor 478 611 - -
Vimu6g03842 848 Pfam Ligand-gated ion channel 647 755 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03842 Vimu-Chr6 37237125 37241321 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03842 18 762 Ion Channels AT5G11210 31.625 5.79e-113 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03842 - - gmx:100777873 1168.68