Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03828 ATGCCGGATTGCATTTTTGCTCCATATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTTCACAAGATATTTGGTGCGAGCAACGTGAGCAAACTCCTGAATGAAGTCCAACCCCACCAAAGGGAGGATGCAGTGAACTCTCTAGCCTATGAAGCTGAGGCAAGGATAAAAGATCCAGTTTATGGGTGTGTTGGGGCAATTTCAGTGCTCCAAAGGCAAGTGATTAGGCTCCAAAAGGAACTGGATGCCACAAACGCTGATTTGATCCGTTATACTTGCAATGAAATGCCAACTCAAGATGGTAGAAGAATGGCTGAAGGTGGAGCTTCCTCTCTGGCTCAGTCTCCTGCTTATTACTACCCTTCTCCTTGGAACAATGATCCACTTGGGGATGGTTATCACCGAGGTGACAATAATATGTGA 426 0.4577 MPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNEMPTQDGRRMAEGGASSLAQSPAYYYPSPWNNDPLGDGYHRGDNNM 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03828 141 Coils Coil 68 88 - -
Vimu6g03828 141 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 101 - -
Vimu6g03828 141 ProSiteProfiles LOB domain profile. 1 89 IPR004883 -
Vimu6g03828 141 Pfam Lateral organ boundaries (LOB) domain 2 85 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03828 Vimu-Chr6 37070072 37070497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03828 3 92 AS2 family AT3G27650 86.667 2.33e-56 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu6g03828 LOB 4.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03828 - - gmx:100306630 270.781