Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03825 ATGAGCCAGTGCGTTCCCAGCTGGGACGTCGACGACAACCCACCACCCCCAAGACTCTCCCTTCGCTCCAACTCCAATTCCACTGCCCCTGATGTCCCCATGTTAGACTACGAGGTTGCGGAGCTGACTTGGGAAAATGGACAACTTTCTATGCATGGCTTAGGGCTACCGCGTGTGCCGGTGAAGCTCCCAACAATCGCTGCCAATAAGTACACATGGGAGAAGCCTCGGGCCGGTGGCACCTTGGAGTCCATAGTGAACCAAGCCACGAGCTTACCGCACCGTGGAAAGCCAACGCTGAACGGCGACGGCGGCATGTACGGGAACTTCCTGGTGCCGTGGTTAGACCCTCACGCTGCGACGGCGAACACGGTGACGATGGACGCATTGGTGCCGTGCTCGAAGCGGGAGCAGAGCAAGCAGGGCATGGAGTCCGTCCCCAGTACGTGCATGGTGGGGTGCTCCACACGTGTGGGGTCGTGCTGCGGCAACCACGGTGCGAAGGGACAAGAGATGAGTGGGAGGGATCAGAGCGTGAGTGGCAGTGCCACGTTCGGGAGGGATAGCAAGCACGTGACCCTTGACACGTGCGACAGAGAACATGGTGTGGCTTTCACTTCCACCTCTATCAACTCTCTCGACAACACCAGCTCCGCTAAGCACTGCACCAAGACCACCACCGTCGACGACCACGATTCTGTTTCCCACAGTAAACCAGTGGGTGAAAACGGGGAGGACGAGAAGAAAAAGAGTGGAAATGGAAAATCGTCGGTATCTACTAAAAGGAGCAGAGCTGCGGCTATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATTAACCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGATAAGGAGGCTGTTTGGTGAAGAGGCACCCAACTGCTCCCACAGGAAACCCTTTCCAGTGACTGATAAAGCTTCAATGTTGGATGAGGTGATAGAATATTTGAAGCAGTTGCAAGCACAGGTGCAGATGATGAATAGAATCAACATGTCATCGATGATGCTGCCATTGACCATGCAACAACAGCTTCAAATGTCTATTATGTCTCCGATGGGCATGGGATTAGGGATGGGAATGGGGATGGGGATGGGAATGGGGATGGACATGAACTCCATGAATCGTGCTAACATCCCTGCCATCCCTCCAGTCCTTCACCCTTCTGCCTTCATGCCGATGGCGGCATCATGGGATGCCACTGCCGTCGGAGGTGGTGACCGATTTCAAGGGAATCCAGCCACCGTAATGCCTGACCCTCTGTCCACACTTTTTGGATGCCAATCACAGGGGAAGTCCCTAGCAGCCTCAGCCTGGGAGAACTACTTCTTCCATGACAATTACAGCGATGCTTCCGCCGACATCCCAAGCACCACCACCGCATCCCTTTGGCCGACCAAGAAGAGAAGAACCCTTTCTTTCTCTTATTTTTCAGAAATGACAAACCCTAAGGTTTCTTCACTTCAGCAAATATGGAGATGGCAACCACCTCTTTCACCTCTAACCGCTTTGTCCCTGCTCCTGCGTCAATCCTGGTCGGTCGATCGATCCTCTTCACGCAGATCGTTCGTGGCATTGAATCGTCGCGACACGTTCACAGTCCAGGGTCACTCTTGCTTTGTTGGCCGTCGCCCTTGCTTCGATTTCGCGCAGAATGACATGCACATTGTATTTGGATTGAAGATTTGTGGAGAACGACTAGAGGAAACCCTAGGATTGAACTTCATTTTTTTCTCTCCTTCTGTGACGACAATGTGA 1797 0.527 MSQCVPSWDVDDNPPPPRLSLRSNSNSTAPDVPMLDYEVAELTWENGQLSMHGLGLPRVPVKLPTIAANKYTWEKPRAGGTLESIVNQATSLPHRGKPTLNGDGGMYGNFLVPWLDPHAATANTVTMDALVPCSKREQSKQGMESVPSTCMVGCSTRVGSCCGNHGAKGQEMSGRDQSVSGSATFGRDSKHVTLDTCDREHGVAFTSTSINSLDNTSSAKHCTKTTTVDDHDSVSHSKPVGENGEDEKKKSGNGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKIRRLFGEEAPNCSHRKPFPVTDKASMLDEVIEYLKQLQAQVQMMNRINMSSMMLPLTMQQQLQMSIMSPMGMGLGMGMGMGMGMGMDMNSMNRANIPAIPPVLHPSAFMPMAASWDATAVGGGDRFQGNPATVMPDPLSTLFGCQSQGKSLAASAWENYFFHDNYSDASADIPSTTTASLWPTKKRRTLSFSYFSEMTNPKVSSLQQIWRWQPPLSPLTALSLLLRQSWSVDRSSSRRSFVALNRRDTFTVQGHSCFVGRRPCFDFAQNDMHIVFGLKICGERLEETLGLNFIFFSPSVTTM 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03825 598 Coils Coil 270 290 - -
Vimu6g03825 598 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 264 333 IPR011598 GO:0046983
Vimu6g03825 598 Gene3D - 259 345 IPR036638 GO:0046983
Vimu6g03825 598 MobiDBLite consensus disorder prediction 224 254 - -
Vimu6g03825 598 MobiDBLite consensus disorder prediction 171 186 - -
Vimu6g03825 598 SMART finulus 270 339 IPR011598 GO:0046983
Vimu6g03825 598 MobiDBLite consensus disorder prediction 1 31 - -
Vimu6g03825 598 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 262 345 IPR036638 GO:0046983
Vimu6g03825 598 MobiDBLite consensus disorder prediction 223 283 - -
Vimu6g03825 598 CDD bHLH_AtPIF_like 264 345 IPR047265 -
Vimu6g03825 598 MobiDBLite consensus disorder prediction 267 283 - -
Vimu6g03825 598 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 39 448 IPR031066 -
Vimu6g03825 598 MobiDBLite consensus disorder prediction 167 186 - -
Vimu6g03825 598 Pfam Helix-loop-helix DNA-binding domain 269 334 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03825 Vimu-Chr6 36994644 37000473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03825 1 443 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 50.889 2.78e-97 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu6g03825 HLH 9.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03825 - - vra:106780284 751.125