Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03823 ATGGCTCTTACACTTGAACGTGCTTTATTTTATCTACATATCCTACTAGTTATACTCTCAACATTCCTAGTCACCCCTTCCTTTTGTTTCAACCCCAAAAGGCTCTTTAACACTTCTTATTATGCTCCATCTGGCTCAGATTGGTCACCTTCACTGGCCACATGGTATGGACCTGCTAATGGAGATGGAAGTGAAGGTGGAGCTTGTGGTTATGGCAACGCTGTTGGGCAACCTCCATTCTCTTCGTTAATATCTGCAGGAAGTCCTCTCATTTATGACTCCGGCAAAGGGTGTGGTTCTTGTTACGAGGTGAAATGCACAGGGAATTCTGCATGCTCAGGCAACCCTGTGAAAGTAGTGATCACTGATGAGTGTGCTGGGTGTGGCTCAGATGCTCAATATCATTTTGATTTGAGTGGCAGTGCTTTTGGAGCAATGGCGGTTTCAGGTCAAGATCAGAATCTACGCAATGCAGGAAAAATAAACATTCAACATAGAAGAATTGAATGCAAGTATCCTGGTAAATCAATAGCTTTTCGTGTGGACTCTGGGTCAAACGAAGAGTATTTTGCTACCTTGGTTGAATTTGAGGATGGGGATGGTGACCTTGCGAAGGTTGAACTGAAAGAAGCACATGATGATGATTCAAATTCATGGGATTCAATGCAACAATCGTGGGGTGCGGTTTGGAAACTTGACAAAGGCTCACCATTGAAGGCACCATTCTCTATCAGGCTCACCACGCTTGAGTCTGGCAAGACCATTGTGGCCAATAATGTCATTCCTGCACAGTGGACTCCTGGTCAGACTTACAGATCAATCGTGAATTTTCAAACCTAA 840 0.4405 MALTLERALFYLHILLVILSTFLVTPSFCFNPKRLFNTSYYAPSGSDWSPSLATWYGPANGDGSEGGACGYGNAVGQPPFSSLISAGSPLIYDSGKGCGSCYEVKCTGNSACSGNPVKVVITDECAGCGSDAQYHFDLSGSAFGAMAVSGQDQNLRNAGKINIQHRRIECKYPGKSIAFRVDSGSNEEYFATLVEFEDGDGDLAKVELKEAHDDDSNSWDSMQQSWGAVWKLDKGSPLKAPFSIRLTTLESGKTIVANNVIPAQWTPGQTYRSIVNFQT 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03823 279 Gene3D - 172 278 IPR036749 -
Vimu6g03823 279 SMART dpbb_1 84 165 IPR007112 -
Vimu6g03823 279 PRINTS Major pollen allergen Lol pI signature 147 162 IPR005795 GO:0005576|GO:0019953
Vimu6g03823 279 PRINTS Major pollen allergen Lol pI signature 195 210 IPR005795 GO:0005576|GO:0019953
Vimu6g03823 279 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Vimu6g03823 279 PRINTS Major pollen allergen Lol pI signature 228 245 IPR005795 GO:0005576|GO:0019953
Vimu6g03823 279 PRINTS Major pollen allergen Lol pI signature 106 116 IPR005795 GO:0005576|GO:0019953
Vimu6g03823 279 PRINTS Major pollen allergen Lol pI signature 179 194 IPR005795 GO:0005576|GO:0019953
Vimu6g03823 279 Pfam Expansin C-terminal domain 177 262 IPR007117 -
Vimu6g03823 279 SUPERFAMILY Barwin-like endoglucanases 36 174 IPR036908 -
Vimu6g03823 279 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 188 273 IPR007117 -
Vimu6g03823 279 PANTHER EXPANSIN-B3 19 277 - -
Vimu6g03823 279 Pfam Lytic transglycolase 85 164 IPR009009 -
Vimu6g03823 279 CDD DPBB_EXPB_N 48 170 - -
Vimu6g03823 279 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Vimu6g03823 279 PRINTS Expansin/Lol pI family signature 219 233 IPR007118 GO:0005576
Vimu6g03823 279 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Vimu6g03823 279 PRINTS Expansin/Lol pI family signature 259 273 IPR007118 GO:0005576
Vimu6g03823 279 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Vimu6g03823 279 PRINTS Expansin/Lol pI family signature 158 174 IPR007118 GO:0005576
Vimu6g03823 279 SUPERFAMILY PHL pollen allergen 175 273 IPR036749 -
Vimu6g03823 279 Gene3D - 35 171 IPR036908 -
Vimu6g03823 279 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 175 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03823 Vimu-Chr6 36917210 36919303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03823 27 277 Expansin Gene Family AT1G65680 60.956 1.48e-112 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03823 - - gmx:100805408 519.235