Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03820 ATGGACAAGCACAAGTGCAAGCTTTGCTTCAGAAGCTTCTCCAATGGCAGAGCCTTGGGGGGTCACATGCGCTCTCACATGATGAACCTTCCTCTCTCCAAGCCCGAAGAAGCGTCACCGCGAACCATCCAACTCAGCTTCGAAGCCGAATCAGCTTCTTCCTCGTCCTCATCATCCGATGATGACGAAGACGGTGACAAGGGTCTCTGTTATGGCCTCAGAGAGAACCCCAAACGAAGCATTCGCCTCGTGGATCCCGAATTCTCGTTCGCAGCTGCAGACACTGGCTCCGCGATCCTCCATGACAGAGAGAGCGAGTCTGAGTCATCCAAGAGCAACCCAACTCGTAAAAGATCCAAAAGGCCATGGAATAACAATAATAATAATAATATTAATAGCAGCAATTATTATTATTATAATGATCATAATAATGATACTAACAACTATACCACCCCC 456 0.4737 MDKHKCKLCFRSFSNGRALGGHMRSHMMNLPLSKPEEASPRTIQLSFEAESASSSSSSSDDDEDGDKGLCYGLRENPKRSIRLVDPEFSFAAADTGSAILHDRESESESSKSNPTRKRSKRPWNNNNNNNINSSNYYYYNDHNNDTNNYTTP 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03820 152 MobiDBLite consensus disorder prediction 99 115 - -
Vimu6g03820 152 MobiDBLite consensus disorder prediction 119 152 - -
Vimu6g03820 152 SUPERFAMILY beta-beta-alpha zinc fingers 3 31 IPR036236 -
Vimu6g03820 152 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 125 IPR044303 GO:0006355
Vimu6g03820 152 MobiDBLite consensus disorder prediction 95 152 - -
Vimu6g03820 152 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Vimu6g03820 152 MobiDBLite consensus disorder prediction 32 76 - -
Vimu6g03820 152 Pfam C2H2-type zinc finger 4 27 - -
Vimu6g03820 152 MobiDBLite consensus disorder prediction 60 76 - -
Vimu6g03820 152 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Vimu6g03820 152 MobiDBLite consensus disorder prediction 44 58 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03820 1 121 C2H2 Transcription Factor Family AT3G60580 45.528 5.33e-15 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu6g03820 zf-C2H2_6 1.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03820 - - vra:106780254 227.639