Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03812 ATGAAGGCCGTGCCCCTACCCTTTCAGGAATTTAGAGGGAACGGGGTGTTAGATTTTGCTTCTGGTGCTGTTGCTGTTTCAGATTCGCTGTTACTCCCACAGCAAGAGCAATTTCTTCAAAGGTGGAATCCCCACAGGGAAAACTATTGCTATGTGGGCATTGAGCCCACTTCTGGTTTGGACCTCAAAAGGAAAACAAGCCCTCCTACATCCTCCTCTACACTGTCTTCCTCACGCGGCAGCAGCGGCTGCGGTGGAGGTTGCGGCTCTACCGATAGCACCACCGGCGCTGGAGCAGCGAAGGTCTCGACTGAAAAGGAAAACAACCCACCTCAAGCAGGGTTAGAGGTTGGACAGGGAAGATGTGGGCTGGGAATGGAGGATTGGGAGAGTGTGTTGTCTGAGTCATCTGGTCAAGATAATTCCATTTTGAAATTAATTATGGGGGACATTGAGGACCCATCTGTGGGATTGACCAAGCTTTTGCAGGGTGGAAGCGCTTCTCAGGATGTTGAATTCAATGGGGTTGGAGTGGGTTTTAGTTTGGTGGATCAAAGTTCTGTGCTTGATCCCATTCCCAGTGTCAACTTTGTGAGCAGCATTGATCCTTCTGGTCCTGGGAATTGTTCCGACTTCCCTTTTAATTCCCATAGTAATGTTAACTCCAATATTTCCAGAATTGGTTCTGGTGTGAATCCGCCTAACCATGGGTTCCCTGATTCATCTAGCAATCTCTCACCAGTTTCACTCTCTCAGGGTGTTTTTCAGCCACAACAACAGCATCCAACAATAGAGCCTCTGGATGAGAAGCTGCAAGTTCTCAATCCCCAGTTTATTTTGAACCAAAATCAAACTCAGTTTATGGCAAACCCAGGTTCCGTTTTGCCTTTGAATTATGCTCAGTTGCAAGAACATCATCATCTTCTCCCACAGCCTCCGGCAAAACGGCTGAATTGTGGCCCAAATTATCAGGTTCCTAAGGCACCCTTTTTGGACTCTGGCCAAGAGCTGTTACTACGGAGGCAGCAACAGCAGCTTCAACTGCTTCCTCACCATCTGCTGCAGAGGTCATCCATGCTGGTGGCCCCAAAGCAGAAAATGGCGAGCCCCAGCGGTGAAGACTTGGCAACCCACCAGCTTCAACAGGCTATAACTGAACAGCTTTTCAAGGCTGCAGAGCTGATCGATGCCGGTAATCTGGAACTCGCGCACGGGATATTGGCGCGGCTCAATCACCAACTTTCCCCCTTTGGGAGGCCTTTTCAGAGGGCTGCTTTTTATTTCAAAGAGGCCTTGCAA 1299 0.4919 MKAVPLPFQEFRGNGVLDFASGAVAVSDSLLLPQQEQFLQRWNPHRENYCYVGIEPTSGLDLKRKTSPPTSSSTLSSSRGSSGCGGGCGSTDSTTGAGAAKVSTEKENNPPQAGLEVGQGRCGLGMEDWESVLSESSGQDNSILKLIMGDIEDPSVGLTKLLQGGSASQDVEFNGVGVGFSLVDQSSVLDPIPSVNFVSSIDPSGPGNCSDFPFNSHSNVNSNISRIGSGVNPPNHGFPDSSSNLSPVSLSQGVFQPQQQHPTIEPLDEKLQVLNPQFILNQNQTQFMANPGSVLPLNYAQLQEHHHLLPQPPAKRLNCGPNYQVPKAPFLDSGQELLLRRQQQQLQLLPHHLLQRSSMLVAPKQKMASPSGEDLATHQLQQAITEQLFKAAELIDAGNLELAHGILARLNHQLSPFGRPFQRAAFYFKEALQ 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03812 433 MobiDBLite consensus disorder prediction 63 110 - -
Vimu6g03812 433 Pfam GRAS domain family 385 433 IPR005202 -
Vimu6g03812 433 ProSiteProfiles GRAS family profile. 375 433 IPR005202 -
Vimu6g03812 433 MobiDBLite consensus disorder prediction 60 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03812 Vimu-Chr6 36775495 36777320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03812 384 432 GRAS Transcription Factor Family AT4G00150 70.000 1.05e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu6g03812 GRAS 4.4e-10 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03812 - - gmx:100805945 656.366