Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03805 ATGTCACCCGTGCAGTTCGTTTCTTCCTCCTCTCATCCTCCTCGTTGGCTTCAAGTCCTCCTCACGGAGAAGTTCTACAACGCTTGCATAATTCACGAGGAGGCAAAGAAGAACGAGAAGAACGTGTATTGCTTGGATTGTTGCATCAGTCTCTGCCCTCACTGTTTGTCCCCTCACCGCTCTCATAGACTCTTGCAGATTAGAAGATATGTGTATCATGATGTTATAAGGTTGGATGACGCTGCAAACTTAATTGACTGCACTTCAGTTCAATCCTACACGACCAACAGTGCAAAAGTGGTATTTTTAAACCAAAGGCCACAGGCAAGGAACTTCAGAGGCTCCGGCAATTTCTGCAGCACCTGTGACAGAAGTCTGCAAGACCCATACCACTTCTGCTCCCTTTCTTGCAAGATCAATTATCTGGTCAGAACTAAGGGTTCTCTCTCTGGTTACCTCTTCGAGTGCAACTACTTGCCGCTACCAGAATGTGGGCTCGACGATGGTCTGATGACCCCTGACTCGGTTCTGGAACCGGCCGGTTCGGCCCGAACCTCGTCAGGCTCCGGAGGGTATGGTGGGGTAGATTGCAGGACCACCCTGGCTTGCACTGCCACCACCGAGATTGTGAGGAAGAAAAGAACAGGAGGCTCTGGTTTCCGGCCACCGTGCCGACCGGCGTGTTCGCCTGTGTCGGAAATCTCGGCGGGTCTGATGAACCGGAGGAAAGGGAACCCGCAGAGGTCCCCGCTGTATTGA 759 0.5204 MSPVQFVSSSSHPPRWLQVLLTEKFYNACIIHEEAKKNEKNVYCLDCCISLCPHCLSPHRSHRLLQIRRYVYHDVIRLDDAANLIDCTSVQSYTTNSAKVVFLNQRPQARNFRGSGNFCSTCDRSLQDPYHFCSLSCKINYLVRTKGSLSGYLFECNYLPLPECGLDDGLMTPDSVLEPAGSARTSSGSGGYGGVDCRTTLACTATTEIVRKKRTGGSGFRPPCRPACSPVSEISAGLMNRRKGNPQRSPLY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03805 252 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 12 251 - -
Vimu6g03805 252 Pfam PLATZ transcription factor 68 139 IPR006734 -
Vimu6g03805 252 ProSiteProfiles Zinc finger B-box type profile. 24 67 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03805 Vimu-Chr6 36670692 36672350 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vimu6g03805 PLATZ 6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03805 - - pvu:PHAVU_008G142900g 495.352