Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03798 GAGTGCTTTGACCCTGTTCTCATCATTCGCCTTCGTTCTAAGGTTGAATTGCTCGGAACCCTCAGCAACAAGTACATCATCGTCTGGTACATTGTGTGGATGGATGAGGAACGCCACAACATCAATTTCATCACAGAGATTTGCACTTCTGGGAACCTCAGGGATTACCACAAGAAGCACCGCCATGTCTCCAATATTAAGGCTTTCCAGAAGTTGTCCAAGCAGGTCCTTGAGGGGTTGGAATATGTTCATACTCATGATCCATGCATCATTCACATGGATCTCAATTGCAGCAACATCTTTGTTAACGGCTACATTCGCCAGGTTACTTGTTTTTGCTTATTCTTCGTTCTCATGCTATTCTACTTTCCAAAGGTGGTCGAACAAAGTTAA 393 0.4377 ECFDPVLIIRLRSKVELLGTLSNKYIIVWYIVWMDEERHNINFITEICTSGNLRDYHKKHRHVSNIKAFQKLSKQVLEGLEYVHTHDPCIIHMDLNCSNIFVNGYIRQVTCFCLFFVLMLFYFPKVVEQS 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03798 130 Pfam Protein kinase domain 12 103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03798 130 SUPERFAMILY Protein kinase-like (PK-like) 4 106 IPR011009 -
Vimu6g03798 130 Gene3D Phosphorylase Kinase; domain 1 28 48 - -
Vimu6g03798 130 Gene3D Transferase(Phosphotransferase) domain 1 10 104 - -
Vimu6g03798 130 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 9 109 - -
Vimu6g03798 130 ProSiteProfiles Protein kinase domain profile. 1 130 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03798 Vimu-Chr6 36563025 36563417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03798 2 109 MAP Kinase Kinase Kinase AT5G55560 65.455 8.30e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vimu6g03798 Pkinase 1.5e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03798 K08867 - gmx:100798280 180.259