Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03794 ATGTGCATCATCCTTCTGAAACTGCTACTCTTCCTCACATGGATTTCTTCTCCATCTCTTTCCACCTCCATGACCCAGCTTGACACTCTCTTGGCCATCAGAGACTCTCTAGACCCAGAGAACCGGGTGTTGCTCTCATGGACCCCCCATTCTGACCCCTGTAGTACTGCTTCTTTTGAGGGTGTGGCTTGCAATGACCAAGGCCTCGTTACCAATATTTCACTGCAAGGAAAGGGTCTATATGGCAGAGTACCTGAAGCTTTGGCTGCTCTCAAGAGCTTGACGGGTCTCTTCCTTCACTTCAATGCCCTCACTGGGATATTACCAAAGGAAATTTCCACTTTGACTGAGCTAAGTGATATGTATCTCAATGTCAATAACCTCTCTGGTGACATCCCTCGCGAGATTGGCAATATGTCAAATCTTCAAGAGTTTACAGTTTTGCAGCTTTGCTATAACAAGTTTAGTGGGAGTATACCTACTGACCTGGGAAGGTTGAGGAAGCTCAGTGTTCTTGCACTGCAATATAATCAATTAAATAGCGCTATTCCTGCTAGTTTGGGTGAAGTGGGGACATTGGCACGATTGGATCTGAGCTTCAATAACCTTTTCGGTCCTATTCCGGTCACATTGGCTAATGCACCTAATCTCCAAACTCTGAATATTCGTAACAATTCTCTCTCTGGCCGTGTACCTACAACTCTGAGAAGACTCAAAGGTGGGTTTCAGTACATGAACAATCCGGGTTTATGTGGGACTGGATTCGCTGATTTAGATTCTTGCAAAGGAGTAAGCACTTCAGAACCTGTTAGACCCGAACCATATGAACCTGGTGATATTTCTACGAAAGATCTTCCTGCATCAATAGAACCACAGCGTGAAAGCTGCGGCGGTGGTCATTGTAAAAGGACATCGAAATCTTCAAAAATTGGTCTGGTTTTTACGGTCATTGGACTCGTTTTTGCTTCAACTGTTGCAGGACTGCTTTTGCTATTCTGGCGACGTAGTCAGATTCAGAAAATTGGAAGTTCTGATAACCGGCTTAAGCAAGTGTGTAAGAAAAGTGCGTTTCCTCTTATCAGTTTGGAGTATTCTGAGGGTTGGGACCCATTAGAGAAAGGTCGATGTGGGTATTCCCAGGAATTTCTTGAGAGCTTTATGTTTAATCTTGAAGAAGTAGAACGCGCAACTCAAATATTCTCAGACGTAAATTTATTGAGGAAGAGTGATTCTTCAGCTGTGTACCGGGGGGTTTTGAGAGATGGTTCTGCTGTGACTATAAAGTGCATCGCCAAAACAAGTTGCAAATCAGATGAAGGTGAGTTCTTGACAGGTTTGAAGATATTGACCTCGTTAAGGCATGAAAATCTATATCTTGATGTTAAGAGAAACAGTGGTAGGGTACTTGATTGGTCGACCAGAGTGTTCATCATTCGTGGTATTGCCAAAGGTATCGATTATCTGCATAGGAAAAAAGGAAGCAAACATGGGATCGTTCACCAAAATATATCAGCTGAAAACGTACTTCTTGATGCTGGGTACAAGGCTCTACTTGCAGATTCGGGATTGCACAAGCTTCTTGAAGATGATGTTGTTTTTTCCGCCCTCAAAGCTAGCGCTGCCATGGGATATCTGCCACCAGAGTACACCAAAACTGGTCGTTTGACAGAAAAGAGTGATGTGTATGCCTTTGGAGTGATTGTTTTCCAGCTTCTTACCGGAAAACGTGACATCACCCAGTTGAATTGCCAAAATGGCATTTTGAAAGATATAGTTGATGAGAATCTTGAAGGGATATTCTCAGAATCAGAGGCCACCAAGCTGAGAAGAGTTGCTGTGCTTTGCACTCACGAGTCCCCACATCTTCGACCATCTATGGATACCCTAATGCTAGAACTGGATGATAATGAGTAG 1914 0.4357 MCIILLKLLLFLTWISSPSLSTSMTQLDTLLAIRDSLDPENRVLLSWTPHSDPCSTASFEGVACNDQGLVTNISLQGKGLYGRVPEALAALKSLTGLFLHFNALTGILPKEISTLTELSDMYLNVNNLSGDIPREIGNMSNLQEFTVLQLCYNKFSGSIPTDLGRLRKLSVLALQYNQLNSAIPASLGEVGTLARLDLSFNNLFGPIPVTLANAPNLQTLNIRNNSLSGRVPTTLRRLKGGFQYMNNPGLCGTGFADLDSCKGVSTSEPVRPEPYEPGDISTKDLPASIEPQRESCGGGHCKRTSKSSKIGLVFTVIGLVFASTVAGLLLLFWRRSQIQKIGSSDNRLKQVCKKSAFPLISLEYSEGWDPLEKGRCGYSQEFLESFMFNLEEVERATQIFSDVNLLRKSDSSAVYRGVLRDGSAVTIKCIAKTSCKSDEGEFLTGLKILTSLRHENLYLDVKRNSGRVLDWSTRVFIIRGIAKGIDYLHRKKGSKHGIVHQNISAENVLLDAGYKALLADSGLHKLLEDDVVFSALKASAAMGYLPPEYTKTGRLTEKSDVYAFGVIVFQLLTGKRDITQLNCQNGILKDIVDENLEGIFSESEATKLRRVAVLCTHESPHLRPSMDTLMLELDDNE 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03794 637 Gene3D Ribonuclease Inhibitor 145 262 IPR032675 -
Vimu6g03794 637 Gene3D Ribonuclease Inhibitor 24 144 IPR032675 -
Vimu6g03794 637 FunFam Protein NSP-INTERACTING KINASE 2 139 262 - -
Vimu6g03794 637 SUPERFAMILY L domain-like 23 239 - -
Vimu6g03794 637 SUPERFAMILY Protein kinase-like (PK-like) 381 630 IPR011009 -
Vimu6g03794 637 Gene3D Transferase(Phosphotransferase) domain 1 457 637 - -
Vimu6g03794 637 Gene3D Phosphorylase Kinase; domain 1 378 456 - -
Vimu6g03794 637 FunFam Leucine-rich repeat receptor-like kinase 25 138 - -
Vimu6g03794 637 MobiDBLite consensus disorder prediction 266 286 - -
Vimu6g03794 637 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 212 IPR046959 -
Vimu6g03794 637 Pfam Protein tyrosine and serine/threonine kinase 463 632 IPR001245 GO:0004672|GO:0006468
Vimu6g03794 637 ProSiteProfiles Protein kinase domain profile. 335 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03794 637 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03794 Vimu-Chr6 36501981 36504315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03794 1 484 Miscellaneous Gene Families AT4G22730 44.653 6.14e-140 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vimu6g03794 PK_Tyr_Ser-Thr 2.8e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03794 - - vun:114183221 1122.84