Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03785 ATGCCTGTTCTAGAACACTTGGACTTCTCCATAGAGGAAAATCAAGTCATTGCCATTCCCTACCTTGCCAAGGTTGGTCTGAGTGGTAGTGGGAAGAGCACATTACTCAACCTTTTACTTCGTCTCTATGAACCTAGTAGTGGTCAGATATATATCGATGGATTCCCTCTTAAAGAGTTGGATATTCGTTGGCTGCGTCAGAACATTGGTTATGTTGCACAGGAATCCCATCTCTTTCATATGGACATCAAGTCAAACATAAAGTATGGTTGCCCCGGGAACATAAAACAAGAAGATATTGAACGGGCGGCGAAAAGGGCCTATGCCCATGATTTCATTTCTTCTCTTCCTAATGGATATGAAACCCTTGTTGATGACAATGTACTTAGTGGCGGACAAAAGCAGCGAATTGCCCTCGCCAGAGCCATTCTTAGGGACCCTGTTATAATGATACTTGATGAAGCAACCAGTGCTCTAGATTCTGAGAGTGAGAATTATATCCAGGAGTCGCTGTATGCGTTAAAAGATGAATCTAAAACAAGAACCATCATTATCATAGCTCATAGGCTTTCTACTGCAAAAGCTGCTGATAAGATCTTTATGGGAGATCATGAAGAGCTTATGCTCAAGGATGGGCTCTATGCAAAATTAAATAAAATTCAAGCAGATACTTTGACTTGA 681 0.4126 MPVLEHLDFSIEENQVIAIPYLAKVGLSGSGKSTLLNLLLRLYEPSSGQIYIDGFPLKELDIRWLRQNIGYVAQESHLFHMDIKSNIKYGCPGNIKQEDIERAAKRAYAHDFISSLPNGYETLVDDNVLSGGQKQRIALARAILRDPVIMILDEATSALDSESENYIQESLYALKDESKTRTIIIIAHRLSTAKAADKIFMGDHEELMLKDGLYAKLNKIQADTLT 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03785 226 ProSitePatterns ABC transporters family signature. 129 143 IPR017871 GO:0005524|GO:0016887
Vimu6g03785 226 SMART AAA_5 13 212 IPR003593 GO:0016887
Vimu6g03785 226 Gene3D - 2 222 IPR027417 -
Vimu6g03785 226 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 220 IPR003439 GO:0005524
Vimu6g03785 226 Pfam ABC transporter 4 157 IPR003439 GO:0005524
Vimu6g03785 226 PANTHER ABC TRANSPORTER B FAMILY 2 218 IPR039421 -
Vimu6g03785 226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 221 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03785 Vimu-Chr6 36385934 36389553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03785 4 226 Calmodulin-binding Proteins AT2G36910 43.725 2.10e-48 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03785 - - vum:124820309 406.757