Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03776 CAACCTATGCAACCTATGCAAGAGGCTAGAGGTCACTCAATCAACATTCAGCCATTTGCAAGCGCATATATGCGCCAACCTCTAGTTTTTGGACATGGAATGAATCTTCCTCTTATGGCCTTTTTTGAAACTATGTTATCTTTTTTTTACAGGATGTTACTTCATCGGGTGATCATAGTAATTTGGATATTGATAACATGTCACATGAGGCAAGAGCTTGTTGAATATTTTCAACAAATTGACAATGTCAGCAGAGGGTTGTCAGAAGAAACTATTACAAGAGTTGTCAAGACAAAAACTTGTTTACTACCTAATAACCTGGATGGGGTAACTTCTAAAGAGCAAGAAACTGATCTTTGTGTAATATGTCAGGATGAATATAAGAATCAGGAAGAGATTGGAATTCTACAATGCCAACATAGATACCACGCAAATTGCATAAGGAGATGGTTACATGAAAAAAATGTTTGTCCCATCTGCAAATCGGAAGTATTAGATTTTGAAGGGACGTTGGAATAA 519 0.3661 QPMQPMQEARGHSINIQPFASAYMRQPLVFGHGMNLPLMAFFETMLSFFYRMLLHRVIIVIWILITCHMRQELVEYFQQIDNVSRGLSEETITRVVKTKTCLLPNNLDGVTSKEQETDLCVICQDEYKNQEEIGILQCQHRYHANCIRRWLHEKNVCPICKSEVLDFEGTLE 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03776 172 Pfam Ring finger domain 119 161 IPR001841 -
Vimu6g03776 172 SUPERFAMILY RING/U-box 119 166 - -
Vimu6g03776 172 SMART ring_2 120 160 IPR001841 -
Vimu6g03776 172 CDD RING-H2_RNF24-like 118 164 - -
Vimu6g03776 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 170 IPR013083 -
Vimu6g03776 172 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 72 165 IPR045191 GO:0061630
Vimu6g03776 172 ProSiteProfiles Zinc finger RING-type profile. 120 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03776 Vimu-Chr6 36297704 36298557 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03776 71 165 C3H Transcription Factor Family AT2G15530 39.175 3.67e-19 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03776 K19041 - vum:124843082 196.823