Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03775 ATGGCATTATCAAATATGTATGATGAAATGGTGGAATTGTTTTCAATACCCATACAACTTCCAGCTTCTGGACATCGAATGGATCTTTCTCCTGTAGCCTTTCTTGAAACTGATGTTACTTCATTGGATGACAATGACAGTAATTTGGACATTGATAACATGTCATATGAGGAGTTTGTTGAATATTTCGAACAAATTGACAATGTAAACAGAGGTTTGTCAGAAGAAACTATTACAAGAGTTGTGAAGTCCAAAACTTGTTTACTATCTAATAACTTGGATGGGATAACTTCTGAAGAGCAAGAAAGTGATCTTTGCATAATATGTCAGGATGAATATAAGAACAAAGAGGAAATTGGAATTCTACCATGCCAACATAAATACCACACAGATTGCATAAGGAAATGGTTACATGAAAAAAATGTTTGTCCAATCTGCAGATCGGAAGTATTAGATTTTGAAGAGAGGTTGAAATAA 477 0.3375 MALSNMYDEMVELFSIPIQLPASGHRMDLSPVAFLETDVTSLDDNDSNLDIDNMSYEEFVEYFEQIDNVNRGLSEETITRVVKSKTCLLSNNLDGITSEEQESDLCIICQDEYKNKEEIGILPCQHKYHTDCIRKWLHEKNVCPICRSEVLDFEERLK 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03775 158 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 24 151 IPR045191 GO:0061630
Vimu6g03775 158 SMART ring_2 106 146 IPR001841 -
Vimu6g03775 158 SUPERFAMILY RING/U-box 100 151 - -
Vimu6g03775 158 CDD RING-H2_RNF24-like 104 150 - -
Vimu6g03775 158 ProSiteProfiles Zinc finger RING-type profile. 106 147 IPR001841 -
Vimu6g03775 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 151 IPR013083 -
Vimu6g03775 158 Pfam Ring finger domain 105 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03775 Vimu-Chr6 36284873 36285693 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03775 49 151 C3H Transcription Factor Family AT2G15530 42.718 1.63e-24 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03775 K19041 - vum:124843082 254.603