Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03769 ATGGGAGTCCACGGTCTCTGGGAACTACTCTCCCCCGTCGGTCGCCGCGTCTCCGTGGAAACCCTCGCCGGGAAAACCCTCGCCGTTGATGCGAGCATATGGATGGTGCAGTTTATGAAAGCGATGCGCGACGAGAAGGGGGAAATGGTTCGCAACGCCCATTTGCTGGGATTTTTCCGACGCATTTGCAAGCTTCTATTCCTCCGCACTAAGCCGGTCTTCGTCTTCGACGGCGGGACCCCCGCCCTCAAGCGCCGCACCGTCATTGCCCGCCGCCGGCAGCGCGAAAACGCTCAAGCTAAAGTCCGCAAAACTGCGGAGAAATTGCTGCTCAATCATTTAAAGACACTACGATTGAAGGAACTGGCTGATGATATTAAGAGCCAGAGGATGCAGAAGAATAGTAATACTAAGGGTCAGAATGGATCTAATCAAAAGGACTTTGTTGGTAGTGATTCAAGAGGAAGTCACGTGAAAGAGCTAGATGAAATGTCTGCAGCTAAATTTGCATCTAAGGAGGACATAAATTCTTCACAGGAAACATTATCCTCAAGTTACAACCAGGAGGAACTTGATGAAATGTTGGCAGCATCTATAGCTGCAGAGGAAAATGGAAAACATGCTAGAAAAGGTGTGCCCTCTATTATAATTAATCCTTCAGAGGAAGAACATGGCGCAGAAGAACAGATTCTACTGCCATCAGTAAACGCAGAAGTTGATATAGCTGTATTAGCTGCTTTGCCACAGTCTATGCAACTCGACATTCTTGCACAGCTAAAAGGAAAGAAAAAAGAAGGGTTACTGAAGGAAGTTTACAATCACGAACAAGGTGATGTCGATTATCAGGGCAAGGGCAAAGGGATTCTGCTCAGTGAAGCTGGCATGGTTGGTTGTAGCTCCAGACATGACACTGTTGCACCAAGGACTAACAATCAAGACTCAATTGACGAAATGTTGGCTGCATCTATTGCTTTGGAGGAAAATGAAAAGTTAGTAAATAATGCATCAACTTCTGTTGGGGCTTCCACTATTGAGGAAGATGAAGTTGACTATGACGAAGATGAAGAGATGATACTGCCAGCTATGCATGGTGAAGTTGATCCACTTGTTCTAGCCTCATTACCTCCATCAATGCAGCTGGACCTTCTTGTTCAGATGAGAGAGCGTTTAATTGCAGAGAACAGACAGAAGTATCAGAAAGTCAAGAAGGATCCTGCAAAATTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCAGACGGGAGATAAATGAAGTGCAGAAAGCTGCAGCTGGAGGAGGAGTAGAGGGTGTACAAACTTCACGGATTGCATCTGAAGCCAACAGAGAATATATATTTTCATCATCTTTTACTGGTGATAAACATGAACTTACCTCCACCGGCATAGAGATAAATAAAAGTACAAAACAGAAGGCACAAGGAATTCATTATTCTCAGAATCTTGCAAATAGCATTTTGGCTGGAAATGATTTTAATAAATCAAGTGAATTGGTTTGCAATGAACCTGGTGAGCCTGCTGATGAAAATATTCAGACATATATTGATGACAGAGGTCAATTTCGTGTAAGTAGATTGAGAGCAATGGGGATGCGTATGACCCGTGATATACAAAGAAATTTGGATTTGATGAAAGAGTTCGAGCAGGAAAGTGCACAAGTGAACAAGGCTTCAAATATTGGAACAATTATAAATGGAGAAAATAAGGGTTCATCAGAAAGTTCTGGGATCCAGCCTGTTGGTAAATCACAAGAGGTGAACGTTGACTTAGTTGGAGAGAATGTGCAAAATGAACAAATTATGCCAGACCAGAATGCTTCTATCGATATATCTTTTGTATATGGTTGCGAAAATGAGTTTGCAAATGGTGAGGATGATATATTTTCTAGTTTAGTAGGAGGAAATCCAGTGGCGATATTTGGCACTGATGATTCTGCAGCAACAGTGCAACGTTCTCATTCTGATTGGGAAGAAGGAATAGTTGAAGGTAAGAGTACTGTTTTTCCCAAACATGATAAGGTGGAATTGAACTCTTCTGTTGCAGATGACGATAATAATAATGAAAGTGAAGTGGAATGGGAGGAAGGAGATTGTGATGGTGCTAACAGCAGCTTACTGTCAGGAAAATATGCATCCCGAGGGCATTTGGAGGAGGAGTCCAATTTGCAAGAGGCAATAAGGAGAAGTCTTGAAAGTGTAGGGGATGGAAAACACAAATGTATGTCATTTCTTGATGCGCATTCAAATACTTATGAGAATAAATTGGATCACGATTTTGAACATGGTGATCATTCTGAACATGGTGATCATTCGGACCCAATGGCTTTAAATGAGAACACTAGGTTCCTGAATAGTAAAAATAAAATGGACGGAATCACTTTGTGTAGGGAAGATGGTACTGAAAAAAAGGAATTACTTGAAACTGAAGATAGAGATAAAATGCATGATTTTGTTTCCGTTAATAATGCACAAACTTTCCATTTTCATGGAAGTCCTTCAAAGCCAGCTTTGACTTTTATTTCGGATAAAACTGAGACATTGATTGACACAACTTGCAAATGGGACAGTCATCTTTGTTCTGAAGATTCAATTTCAGATACAAATATAATGACGAAGGACCAGGTCCCTGTGGTTGAAAAGAAGTTATCTGATGAACATGATAATGATAAAGTGTCTTCCTATCATAAGAATACACCCAAGGCTATTCCAGTTGGCGCAACTGAAGAGGAGAAAAAGAACTATATTAAGGAACCTGAACCATTTAGTAATTGTACAGACACTACCAAACCCACTATTCATTTGGGGGAGTCGTCCTTGAAAGGAGTAACAGAAGAGCTTATTGAGCCAAACTTGGCTTCAGAGGGTAATAATGGAAATTTATTTGACAAAAGGAACAGTAGCCATGGCAGTGATACGGTTAACAGCCCAGGGGATTTTCCTGCTCTAGCAACTCAGGTTAGCCTGGAGGAAGAAATTCAAATTCTTGGTCAAGAATATATTAACTTAGAGAATGAGCAGAGGAAGCTAGAGCGGAATGCAGAGTCAGTAAACAGTGAATTATTCACTGAATGTCAGGAACTACTGCAAATGTTTGGCTTGCCATATATTATTGCTCCAATGGAAGCAGAAGCTCAATGTGCTTATTTGGAACTTGAGAAACTAGTTGATGGTGTTGTAACTGATGACTCTGATGTCCTTCTATTTGGGGCACGCAGTGTTTACAAAAATATATTTGATGACCGAAAATATGTAGAGACATACTTCATGGAGGACATTGAAAAGGAGCTTGGACTGACCAGAGAAAAATTAATACGCATGGCTCTACTTCTTGGGAGTGATTATACTGAAGGTGTAAGTGGGATTGGCATCGTTAATGCTATTGAGGTTTTGAATGCATTCCCTGAGGAAGATGGCCTCCTGAAATTCCGGAAATGGGTTGAGTCACCAGATCCCACCATCCTTGGAAGGTTGGATGCAAAAAGTGGATCAAATTCCAGAAAGAAAGGATCAAAAGTTGAAGAAAAGATAAATTCCTTAAATTGTGATGCTAAAGAGTCTCCATCAGAGCAGAACCTCCCCCATGCCCTGGAGGAAAATGAGTTGCCAGATTACATTCAAGAAACAAAGCAAACTTTCTTCAATAAGCATGTAATTGATTTTCAGCCTTTGAGAAATGTTAGCAAGAATTGGCACATCCCTTCTTCTTTTCCAAGTGAAACAGTTATATCTGCTTATTGTTCTCCACATGTTGATAAATCAACCGAGCCTTTCACATGGGGGAAGCCAGATCACCTTGTTCTTCGGAAATTGTGCTGGGAGAAATTTGGCTGGATTGGCCAGAAAGCAGACGAACTGATATTACCTGTGTTAAAGGAGTATAATAAACGTGAGACTCAATTGCGGTTGGAAGCATTTTACAGTTTTAATGAGAGATTTGCGAAAATCCGTAGCAAAAGAATTAAGAAGGCAGTAAAAGGAATAACTGGTAAGCTTCCTTCAGATATGATAGATGATTCTGCAAAGGTGTTGTCCAAGAGTAGGAAGATTGGGAGAGAACCCGAGGCTAGCACATTAGAGATTTCAGGGGGAACAGACAAGTGTCTTGAACGTCAAAGGAAATCGAAAATAAAACAGTCAACGAAAAGGAAGAATGATACTGTTGCCAAGGAACAGTCAAAGAAAAAGAAAGACAATGATGATCCGTCTTCAGCACCTGGTACATCAGAGATGGAGAATTTACATCCAAGTATGCAGACAGAAGAACAGTGTGATGGTAAGGCATTAATTCAGAATACAAGTGGCCGAGGAAGAAATAGAGGTATGGGAATAAAAAGAGGAAGGGACAAGGAGAATCTCAGTTCATCTGCTAGCAGTGACATTGATGATCAGGGACCAAGAGTGCATGTGGATAAGTTTCCAGAACACGTGAGAAAGTCATTGCGATCTCGGAAACCTGTCAACTATTCTTTCGAAGATCCTGAAGATGAAGATGCCGATGATGCCTTTGATCATAGTAATCAGACTGGTTCAATTGAAGAAAATTTATCTCAGATTCATGGTGCATCTGAAGATGGTCCAACAGATTTCAGTGCAATGAATTTTCCTTCAAGGGAGAACTCACCAACCGACCCTTTCAAGTCAGAAGGTGATATTAATCATCCTAGTACTGGCAATCATGATTCTTCTACTGGAAATCATGACTCTTCTGATGACTACCTTAAAATGGGAGGTGGATTCTGTTTAGATGATAGTGAGACAGACAAGCTGGACACAATTGACGATGTCAATACTGCCACAGTAAATTCTACTCAAGACTTTTCACACTTTTCTGATGGTTTGGATGAAACTAACCGTGATAAAAATAGTTCAGATATATTATTTTCTGGCACTGAAAAGCCTGAAAATGGGACAGAAGATGGAGGAGACTTTTATGAATTTGGTATAAAGCGAAATGACCTTGTAACTACTAGTAGTTATGATCATTCTGACGTAGGGATCTTGAAACCAGAGAATGTTCATAACAATAGTGGAGCCTCCGCTGGAGTTTTCAGTGCTATGCCTTTTTTGAGGAAAAGAAGGAAAAAGTGA 5115 0.4072 MGVHGLWELLSPVGRRVSVETLAGKTLAVDASIWMVQFMKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKLLLNHLKTLRLKELADDIKSQRMQKNSNTKGQNGSNQKDFVGSDSRGSHVKELDEMSAAKFASKEDINSSQETLSSSYNQEELDEMLAASIAAEENGKHARKGVPSIIINPSEEEHGAEEQILLPSVNAEVDIAVLAALPQSMQLDILAQLKGKKKEGLLKEVYNHEQGDVDYQGKGKGILLSEAGMVGCSSRHDTVAPRTNNQDSIDEMLAASIALEENEKLVNNASTSVGASTIEEDEVDYDEDEEMILPAMHGEVDPLVLASLPPSMQLDLLVQMRERLIAENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREINEVQKAAAGGGVEGVQTSRIASEANREYIFSSSFTGDKHELTSTGIEINKSTKQKAQGIHYSQNLANSILAGNDFNKSSELVCNEPGEPADENIQTYIDDRGQFRVSRLRAMGMRMTRDIQRNLDLMKEFEQESAQVNKASNIGTIINGENKGSSESSGIQPVGKSQEVNVDLVGENVQNEQIMPDQNASIDISFVYGCENEFANGEDDIFSSLVGGNPVAIFGTDDSAATVQRSHSDWEEGIVEGKSTVFPKHDKVELNSSVADDDNNNESEVEWEEGDCDGANSSLLSGKYASRGHLEEESNLQEAIRRSLESVGDGKHKCMSFLDAHSNTYENKLDHDFEHGDHSEHGDHSDPMALNENTRFLNSKNKMDGITLCREDGTEKKELLETEDRDKMHDFVSVNNAQTFHFHGSPSKPALTFISDKTETLIDTTCKWDSHLCSEDSISDTNIMTKDQVPVVEKKLSDEHDNDKVSSYHKNTPKAIPVGATEEEKKNYIKEPEPFSNCTDTTKPTIHLGESSLKGVTEELIEPNLASEGNNGNLFDKRNSSHGSDTVNSPGDFPALATQVSLEEEIQILGQEYINLENEQRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELEKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYFMEDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVLNAFPEEDGLLKFRKWVESPDPTILGRLDAKSGSNSRKKGSKVEEKINSLNCDAKESPSEQNLPHALEENELPDYIQETKQTFFNKHVIDFQPLRNVSKNWHIPSSFPSETVISAYCSPHVDKSTEPFTWGKPDHLVLRKLCWEKFGWIGQKADELILPVLKEYNKRETQLRLEAFYSFNERFAKIRSKRIKKAVKGITGKLPSDMIDDSAKVLSKSRKIGREPEASTLEISGGTDKCLERQRKSKIKQSTKRKNDTVAKEQSKKKKDNDDPSSAPGTSEMENLHPSMQTEEQCDGKALIQNTSGRGRNRGMGIKRGRDKENLSSSASSDIDDQGPRVHVDKFPEHVRKSLRSRKPVNYSFEDPEDEDADDAFDHSNQTGSIEENLSQIHGASEDGPTDFSAMNFPSRENSPTDPFKSEGDINHPSTGNHDSSTGNHDSSDDYLKMGGGFCLDDSETDKLDTIDDVNTATVNSTQDFSHFSDGLDETNRDKNSSDILFSGTEKPENGTEDGGDFYEFGIKRNDLVTTSSYDHSDVGILKPENVHNNSGASAGVFSAMPFLRKRRKK 1704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03769 1704 MobiDBLite consensus disorder prediction 1541 1572 - -
Vimu6g03769 1704 MobiDBLite consensus disorder prediction 687 707 - -
Vimu6g03769 1704 MobiDBLite consensus disorder prediction 1617 1650 - -
Vimu6g03769 1704 CDD H3TH_XPG 1110 1261 - -
Vimu6g03769 1704 ProSitePatterns XPG protein signature 2. 1041 1055 IPR019974 GO:0016788
Vimu6g03769 1704 MobiDBLite consensus disorder prediction 1513 1532 - -
Vimu6g03769 1704 SMART xpgn3 1 98 IPR006085 GO:0004518
Vimu6g03769 1704 FunFam DNA repair protein UVH3 1 146 - -
Vimu6g03769 1704 FunFam DNA repair protein UVH3 988 1106 - -
Vimu6g03769 1704 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vimu6g03769 1704 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vimu6g03769 1704 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vimu6g03769 1704 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Vimu6g03769 1704 Gene3D - 1 142 - -
Vimu6g03769 1704 MobiDBLite consensus disorder prediction 129 151 - -
Vimu6g03769 1704 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Vimu6g03769 1704 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Vimu6g03769 1704 MobiDBLite consensus disorder prediction 1374 1411 - -
Vimu6g03769 1704 MobiDBLite consensus disorder prediction 1472 1500 - -
Vimu6g03769 1704 CDD PIN_XPG_RAD2 2 92 - -
Vimu6g03769 1704 Pfam XPG I-region 1041 1122 IPR006086 GO:0004518
Vimu6g03769 1704 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1107 1323 IPR036279 -
Vimu6g03769 1704 Gene3D - 991 1106 - -
Vimu6g03769 1704 MobiDBLite consensus disorder prediction 1354 1581 - -
Vimu6g03769 1704 SUPERFAMILY PIN domain-like 2 1122 IPR029060 -
Vimu6g03769 1704 SMART HhH_4 1109 1142 IPR008918 GO:0003677|GO:0003824
Vimu6g03769 1704 Coils Coil 994 1028 - -
Vimu6g03769 1704 Gene3D - 1107 1169 - -
Vimu6g03769 1704 SMART xpgineu 1038 1107 IPR006086 GO:0004518
Vimu6g03769 1704 MobiDBLite consensus disorder prediction 1450 1464 - -
Vimu6g03769 1704 CDD PIN_XPG_RAD2 1024 1108 - -
Vimu6g03769 1704 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Vimu6g03769 1704 MobiDBLite consensus disorder prediction 1412 1446 - -
Vimu6g03769 1704 MobiDBLite consensus disorder prediction 959 985 - -
Vimu6g03769 1704 FunFam DNA repair protein UVH3 1107 1164 - -
Vimu6g03769 1704 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 260 - -
Vimu6g03769 1704 MobiDBLite consensus disorder prediction 125 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03769 Vimu-Chr6 36194626 36206066 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03769 1032 1139 Core DNA Replication Machinery Family AT5G26680 36.937 7.07e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03769 K10846 - gmx:100820295 2509.95