Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03767 ATGAAGAATCCTTCTTCCTCAGCATCTTCTCAATCCAATAGGAACCAGGAAAATGCAACCTCTGATGCTCTTCAAAGGCAGCTGCAACAGCTGTTCCATCTTCATGATTCTGGTCTGGACCAGGCTTTTATTGATGGACTTCCTGTTTTCCAATACAAGGAGATAAAGGGGTTGAAGGAGCCATTTGACTGTGCTGTCTGTCTCTGTGAGTTTTCTGAAAAGGATAAACTCAGGTTGCTGCCTATGTGCAGCCATGCCTTTCATATCAGCTGTATAGACACCTGGCTTTTGTCCAACTCCTCATGCCCTCTTTGCAGGGGTACCCTCCTTACTCCTGGCTTTCCCCTTGAAAATCCATTGTTTGATTTTGATTATTTGAGGGATGATAATGGGGAACCTGAGTTCCCAACTAGGCAGAAAACGATTGAAATCGAAGAAACTGTGGTAGAGAAGGGGGTTTTCCCTGTGAGACTTGGCAAATTCAGAAGGCTTGATGTGGAGGCAGAGGTGGCTGCTGGAGGAGAGACTAGTAGCAATAATTTGGATGCCAGAAGATGTTATTCCATGGGATCTTATCAGTACGTGCTTGGGACTTCAGACCTCAGAATAACCTTGAGCCATGACCGAGAAGGTCGTCATGCACAGTTCTTGAAAGGAACAGAAAACTTAGAGAGACTTTCAGTTGAGGGGGATATTGAAGGAAAGAAGATTACAAGTGTGTGTAAAGGTGAGAGCTTTTCTGTTTCCAAAATCTGGCAGTGGTCACAGAAGGGAAAATTTTCAGTTTCTTCTGATACCCAGATGAGTATGCCCTCTTCTCTTATCACGGATTTGCCTTGGATGAGAGAAACGAGAAGGATATGA 864 0.4433 MKNPSSSASSQSNRNQENATSDALQRQLQQLFHLHDSGLDQAFIDGLPVFQYKEIKGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSSCPLCRGTLLTPGFPLENPLFDFDYLRDDNGEPEFPTRQKTIEIEETVVEKGVFPVRLGKFRRLDVEAEVAAGGETSSNNLDARRCYSMGSYQYVLGTSDLRITLSHDREGRHAQFLKGTENLERLSVEGDIEGKKITSVCKGESFSVSKIWQWSQKGKFSVSSDTQMSMPSSLITDLPWMRETRRI 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03767 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 111 IPR013083 -
Vimu6g03767 287 ProSiteProfiles Zinc finger RING-type profile. 64 106 IPR001841 -
Vimu6g03767 287 MobiDBLite consensus disorder prediction 1 20 - -
Vimu6g03767 287 SMART ring_2 64 105 IPR001841 -
Vimu6g03767 287 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 10 252 - -
Vimu6g03767 287 CDD RING-H2_EL5-like 63 106 - -
Vimu6g03767 287 Pfam Ring finger domain 63 106 IPR001841 -
Vimu6g03767 287 SUPERFAMILY RING/U-box 43 112 - -
Vimu6g03767 287 FunFam RING-H2 finger protein ATL46 26 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03767 Vimu-Chr6 36171481 36173565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03767 23 259 C3H Transcription Factor Family AT2G18650 41.026 5.81e-54 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03767 - - qsa:O6P43_004596 424.476