Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03763 ATGAAAGTGGAGGCACAGGAGGGGCATTTGTCTTGTCTGAGAGAGCAACCCATCCAAACCACGGTGATCTGCTCGCGATTGTCCTTGTCCTCGTTCGCTGTAAAGCCCCGCTCTCTGACCCACCCGCGGAATCCGTTCACCCGGAATCCGCCATGGAAGATGTATAACATAATATCGACGCCGGCGTCTAAGTTCCGCCAGTTCAGGCGACTCCGATCCCGACCGAAGACAACAACAGAGACAGAGGAGGAGCACGCGTTTCAAATCCTATGGCGGCACCAGATACTGGACCCCGACAGCGACATCGTGGCGTATTGGAACAAGGTGTTTCTCGTGACAAGCCTCCTCGCTCTCTTCGTCGACCCCCTCTACTTCTTCCTCCCCACAGTGGGTGGCCCCGCCTGCTTGCAGGCCGACCCCAAACTCAGCATCATCGTCACCATCATCCGCTCCTTCGCTGACCTCTTCTACGTCCTCCACATGCTCATGAAATTCCGAACCGCCTTCGTGGCCCCCAACTCTAGAATCTTCGGCCGCGGTGAACTCGTCATGGACTCCCGCGAAATCGCCACGCGTTACCTCAAGTCCGATTTCGTCATTGACCTCGCCGCCACCATCCCTCTCCCCCAGGCACGCTCACAAACACGCTTCTTTCTGCTTTCTTCTTTCTCCTATCTGCATTGCTTTAAAACCATTTTTTTTCTCCATGCTAACATTCTTTTCCGTCTTCGTTCCATGAATTCTAACCGTTATGTGCATTTTGCTTTGCAGATTGTGATTTGGTTGTTTCTCATCTTTCATTTGAACCAGCGTATTCAGAAAACCACTGGCGTTATTGCCAAGACTCCCTGGATTGGAGCCGCATACAATCTTATTCTCTACATGCTAGCCAGCCATGTTACAGGAGCCACTTGGTATCTATCGTCAATAGGGAGGCAATTTAACTGCTGGAAAACGCAGTGCCAAATAGAGAACAAATCACATACCCTCTCTTGCTTTTCAAGTTATCTTGATTGCAATAGTTTGAACGTCCCTGATAGGCAATACTGGCTAAACATCACCCATTTTCAAGGAAAGATACTTCTACTGTCTTTGGTGGGGTTTGAGAAATCTAAGTTCATACGGACAGAACTTGGACACCACCACATATCTTCCAGAGACATTATTTTGCATCGTCTTATGCATTGCTGGACTGGTCCTCTTTTCGCTTTTGATTGGAAACATGGAGTTAGACTTGAAGAATGGAGGATTAAGAAAAGAGATACCGAGGAGTGGATGAGGCATCGCCAGTTACCACCACATTTGCAGGAACGTATCCGTCGTTTTGTTCAATATAAATGGCTTGCAACAAGAGGAGTTGATGAAGAAGCCATAATGCTTTCGTTACCTTTGGATCTTCGTCGAGAAATTCAACATCACTTGTGTCTTTCTCTCGTGCGGCGTGTCCCCTTTTTCTCCCAAATGGACGATCAACTTCTTGATGCAATTTGTGAACGTCTTTCATCATCACTAAGCACTGAAGGCACCTACATATTTCGAGAGGGTGATCCGGTGGATGAAATGTTGTTTATTATCAGAGGGCAATTGGAGAGTTCCACGACCAACGGAGGAAGGTCTGGATTCTTCAACTGCATCAAACTCAGGCCTGGTGACTTTTGCGGAGAGGAATTGCTAACATGGGCCCTAATGCCAAACTCAACCCTCAACCTACCTTCTTCTACTCGAACTGTCAAAGCTCTTTCTGAAGTTGAAGCTTTTTCACTACAAGCAGAGGATCTTAAATTTGTGGCAAGTCAGTTCAAGCGCCTTCACAGCAAGAAACTTCAGCATGCGTTTAGGTATTATTCCCATCAATGGAGAACATGGGGTGCTTGCTTCATACAAGCTGCTTGGAGACGATATCAGAAAAGAAAGGCAACAAGGGAGTTATCCCTGAAAGAGGGTCTCTACTACCTGTCTTTGCCTGAGACGGAAGAAAGTGGACATTTGGAGGATGATGAAACCGGGGAATCCTCAGGGAAAACGAAAAAGATTCAGAATCTTGGTGCAACTGTCTTGGCATCAAAGTTTGCTGCCAATACAAGGAAAGGGGCACATAAGCTACCAGATCCTGTGCCCCAGTTGTTCAAGCCAGACGAACCTGATTTTTCTCTAGATCATGAACTTTAG 2169 0.4735 MKVEAQEGHLSCLREQPIQTTVICSRLSLSSFAVKPRSLTHPRNPFTRNPPWKMYNIISTPASKFRQFRRLRSRPKTTTETEEEHAFQILWRHQILDPDSDIVAYWNKVFLVTSLLALFVDPLYFFLPTVGGPACLQADPKLSIIVTIIRSFADLFYVLHMLMKFRTAFVAPNSRIFGRGELVMDSREIATRYLKSDFVIDLAATIPLPQARSQTRFFLLSSFSYLHCFKTIFFLHANILFRLRSMNSNRYVHFALQIVIWLFLIFHLNQRIQKTTGVIAKTPWIGAAYNLILYMLASHVTGATWYLSSIGRQFNCWKTQCQIENKSHTLSCFSSYLDCNSLNVPDRQYWLNITHFQGKILLLSLVGFEKSKFIRTELGHHHISSRDIILHRLMHCWTGPLFAFDWKHGVRLEEWRIKKRDTEEWMRHRQLPPHLQERIRRFVQYKWLATRGVDEEAIMLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLSSSLSTEGTYIFREGDPVDEMLFIIRGQLESSTTNGGRSGFFNCIKLRPGDFCGEELLTWALMPNSTLNLPSSTRTVKALSEVEAFSLQAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGACFIQAAWRRYQKRKATRELSLKEGLYYLSLPETEESGHLEDDETGESSGKTKKIQNLGATVLASKFAANTRKGAHKLPDPVPQLFKPDEPDFSLDHEL 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03763 722 CDD CAP_ED 484 615 IPR000595 -
Vimu6g03763 722 Pfam Ion transport protein 105 338 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vimu6g03763 722 Pfam Cyclic nucleotide-binding domain 507 595 IPR000595 -
Vimu6g03763 722 Gene3D Helix hairpin bin 412 475 - -
Vimu6g03763 722 Gene3D Jelly Rolls 482 602 IPR014710 -
Vimu6g03763 722 ProSiteProfiles cAMP/cGMP binding motif profile. 484 614 IPR000595 -
Vimu6g03763 722 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 410 716 - -
Vimu6g03763 722 SUPERFAMILY Voltage-gated potassium channels 97 313 - -
Vimu6g03763 722 FunFam Cyclic nucleotide-gated ion channel 1 411 475 - -
Vimu6g03763 722 MobiDBLite consensus disorder prediction 696 722 - -
Vimu6g03763 722 SMART cnmp_10 484 615 IPR000595 -
Vimu6g03763 722 FunFam Cyclic nucleotide-gated ion channel 1 482 600 - -
Vimu6g03763 722 SUPERFAMILY cAMP-binding domain-like 414 609 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03763 Vimu-Chr6 36110116 36113847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03763 63 721 Ion Channels AT5G14870 56.474 0.0 781
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03763 K05391 - gmx:100802812 1001.5