LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu6g03763	ATGAAAGTGGAGGCACAGGAGGGGCATTTGTCTTGTCTGAGAGAGCAACCCATCCAAACCACGGTGATCTGCTCGCGATTGTCCTTGTCCTCGTTCGCTGTAAAGCCCCGCTCTCTGACCCACCCGCGGAATCCGTTCACCCGGAATCCGCCATGGAAGATGTATAACATAATATCGACGCCGGCGTCTAAGTTCCGCCAGTTCAGGCGACTCCGATCCCGACCGAAGACAACAACAGAGACAGAGGAGGAGCACGCGTTTCAAATCCTATGGCGGCACCAGATACTGGACCCCGACAGCGACATCGTGGCGTATTGGAACAAGGTGTTTCTCGTGACAAGCCTCCTCGCTCTCTTCGTCGACCCCCTCTACTTCTTCCTCCCCACAGTGGGTGGCCCCGCCTGCTTGCAGGCCGACCCCAAACTCAGCATCATCGTCACCATCATCCGCTCCTTCGCTGACCTCTTCTACGTCCTCCACATGCTCATGAAATTCCGAACCGCCTTCGTGGCCCCCAACTCTAGAATCTTCGGCCGCGGTGAACTCGTCATGGACTCCCGCGAAATCGCCACGCGTTACCTCAAGTCCGATTTCGTCATTGACCTCGCCGCCACCATCCCTCTCCCCCAGGCACGCTCACAAACACGCTTCTTTCTGCTTTCTTCTTTCTCCTATCTGCATTGCTTTAAAACCATTTTTTTTCTCCATGCTAACATTCTTTTCCGTCTTCGTTCCATGAATTCTAACCGTTATGTGCATTTTGCTTTGCAGATTGTGATTTGGTTGTTTCTCATCTTTCATTTGAACCAGCGTATTCAGAAAACCACTGGCGTTATTGCCAAGACTCCCTGGATTGGAGCCGCATACAATCTTATTCTCTACATGCTAGCCAGCCATGTTACAGGAGCCACTTGGTATCTATCGTCAATAGGGAGGCAATTTAACTGCTGGAAAACGCAGTGCCAAATAGAGAACAAATCACATACCCTCTCTTGCTTTTCAAGTTATCTTGATTGCAATAGTTTGAACGTCCCTGATAGGCAATACTGGCTAAACATCACCCATTTTCAAGGAAAGATACTTCTACTGTCTTTGGTGGGGTTTGAGAAATCTAAGTTCATACGGACAGAACTTGGACACCACCACATATCTTCCAGAGACATTATTTTGCATCGTCTTATGCATTGCTGGACTGGTCCTCTTTTCGCTTTTGATTGGAAACATGGAGTTAGACTTGAAGAATGGAGGATTAAGAAAAGAGATACCGAGGAGTGGATGAGGCATCGCCAGTTACCACCACATTTGCAGGAACGTATCCGTCGTTTTGTTCAATATAAATGGCTTGCAACAAGAGGAGTTGATGAAGAAGCCATAATGCTTTCGTTACCTTTGGATCTTCGTCGAGAAATTCAACATCACTTGTGTCTTTCTCTCGTGCGGCGTGTCCCCTTTTTCTCCCAAATGGACGATCAACTTCTTGATGCAATTTGTGAACGTCTTTCATCATCACTAAGCACTGAAGGCACCTACATATTTCGAGAGGGTGATCCGGTGGATGAAATGTTGTTTATTATCAGAGGGCAATTGGAGAGTTCCACGACCAACGGAGGAAGGTCTGGATTCTTCAACTGCATCAAACTCAGGCCTGGTGACTTTTGCGGAGAGGAATTGCTAACATGGGCCCTAATGCCAAACTCAACCCTCAACCTACCTTCTTCTACTCGAACTGTCAAAGCTCTTTCTGAAGTTGAAGCTTTTTCACTACAAGCAGAGGATCTTAAATTTGTGGCAAGTCAGTTCAAGCGCCTTCACAGCAAGAAACTTCAGCATGCGTTTAGGTATTATTCCCATCAATGGAGAACATGGGGTGCTTGCTTCATACAAGCTGCTTGGAGACGATATCAGAAAAGAAAGGCAACAAGGGAGTTATCCCTGAAAGAGGGTCTCTACTACCTGTCTTTGCCTGAGACGGAAGAAAGTGGACATTTGGAGGATGATGAAACCGGGGAATCCTCAGGGAAAACGAAAAAGATTCAGAATCTTGGTGCAACTGTCTTGGCATCAAAGTTTGCTGCCAATACAAGGAAAGGGGCACATAAGCTACCAGATCCTGTGCCCCAGTTGTTCAAGCCAGACGAACCTGATTTTTCTCTAGATCATGAACTTTAG	2169	0.4735	MKVEAQEGHLSCLREQPIQTTVICSRLSLSSFAVKPRSLTHPRNPFTRNPPWKMYNIISTPASKFRQFRRLRSRPKTTTETEEEHAFQILWRHQILDPDSDIVAYWNKVFLVTSLLALFVDPLYFFLPTVGGPACLQADPKLSIIVTIIRSFADLFYVLHMLMKFRTAFVAPNSRIFGRGELVMDSREIATRYLKSDFVIDLAATIPLPQARSQTRFFLLSSFSYLHCFKTIFFLHANILFRLRSMNSNRYVHFALQIVIWLFLIFHLNQRIQKTTGVIAKTPWIGAAYNLILYMLASHVTGATWYLSSIGRQFNCWKTQCQIENKSHTLSCFSSYLDCNSLNVPDRQYWLNITHFQGKILLLSLVGFEKSKFIRTELGHHHISSRDIILHRLMHCWTGPLFAFDWKHGVRLEEWRIKKRDTEEWMRHRQLPPHLQERIRRFVQYKWLATRGVDEEAIMLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLSSSLSTEGTYIFREGDPVDEMLFIIRGQLESSTTNGGRSGFFNCIKLRPGDFCGEELLTWALMPNSTLNLPSSTRTVKALSEVEAFSLQAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGACFIQAAWRRYQKRKATRELSLKEGLYYLSLPETEESGHLEDDETGESSGKTKKIQNLGATVLASKFAANTRKGAHKLPDPVPQLFKPDEPDFSLDHEL	722

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu6g03763	722	CDD	CAP_ED	484	615	IPR000595	-
	Vimu6g03763	722	Pfam	Ion transport protein	105	338	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Vimu6g03763	722	Pfam	Cyclic nucleotide-binding domain	507	595	IPR000595	-
	Vimu6g03763	722	Gene3D	Helix hairpin bin	412	475	-	-
	Vimu6g03763	722	Gene3D	Jelly Rolls	482	602	IPR014710	-
	Vimu6g03763	722	ProSiteProfiles	cAMP/cGMP binding motif profile.	484	614	IPR000595	-
	Vimu6g03763	722	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	410	716	-	-
	Vimu6g03763	722	SUPERFAMILY	Voltage-gated potassium channels	97	313	-	-
	Vimu6g03763	722	FunFam	Cyclic nucleotide-gated ion channel 1	411	475	-	-
	Vimu6g03763	722	MobiDBLite	consensus disorder prediction	696	722	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu6g03763	Vimu-Chr6	36110116	36113847	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu6g03763	63	721	Ion Channels	AT5G14870	56.474	0.0	781

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu6g03763	K05391		-	gmx:100802812	1001.5

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