Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03760 ATGGCTGCAACATCAGTGCCTTCTCATATGAAAGCTTGGAATTACTCGGAGTATGGCAAATCCCGCGAAGTTCTCAAGTTTAACAACAGCGTGGCTTTACCTCCGGTGAAGGAAGATCAGGTCCTCATCAAGGTCGCTGCTGCTTCCATTAACCCCATTGATTACAAGAGAATGGAAGGTCATTTCAAGAACTCCGATTCCCCTTTACCCACTGTTCCGGGATTTGATGTTGCTGGAGTGGTGGTGAAAGTGGGAAGTGAAGTGAAGAAATTCAAGGTTGGCGATGAAGTCTACGGTGATATCAATTTGAAAGCTTTGGAATATCCGAAGGTTATTGGTTCTTTGGCCGAATACACTGCTGCAGAAGAGAGACTATTGGCTCACAAGCCAGCGAGTCTGAGCTTTGTTGAGGCTGCTAGCCTTCCTTTAACACTTGAGACAGCTTATGAAGGCCTCGAACGAACTCAGTTCTCTGCAGGTAAATCTATCCTTGTGCTTGGTGGTGCTGGTGGAGTTGGAACCCATGTTATTCAGCTTGCAAAGCATGTATATGGAGCATCCAAGGTAGCAGCCACAGCTAGCACCGGAAAATTGGAATTGTTGGGCAATTTGGGGGCTGACTTGCCAATTGATTATACAAAAGAGAATTTTGAAGACTTGTCTGAAAAGTTTGATGTGGTGTATGATACAGTAGGGCAAACTGAACTGGCATTCAAGGCCTTGAAAGAAGGAGGCAAAGTTGTGACCATAGTACCACCTGGGTTTCCTCCAGCTATATTGTTCATTCTCAATACTGATGGGGCTATTTTAGAGAAACTAAACCCCTATTTTGAGAGTGGTAAGTTGAAGCCAATACTTGACCCCAAGAGCCCCTTTCCATTTTCTCAGGCTGTTGAAGCATTTGCCCATCTGGAAACAAACAGGGCAACTGGAAAAGTTGTTATCTATCCCATTCCATGA 960 0.4479 MAATSVPSHMKAWNYSEYGKSREVLKFNNSVALPPVKEDQVLIKVAAASINPIDYKRMEGHFKNSDSPLPTVPGFDVAGVVVKVGSEVKKFKVGDEVYGDINLKALEYPKVIGSLAEYTAAEERLLAHKPASLSFVEAASLPLTLETAYEGLERTQFSAGKSILVLGGAGGVGTHVIQLAKHVYGASKVAATASTGKLELLGNLGADLPIDYTKENFEDLSEKFDVVYDTVGQTELAFKALKEGGKVVTIVPPGFPPAILFILNTDGAILEKLNPYFESGKLKPILDPKSPFPFSQAVEAFAHLETNRATGKVVIYPIP 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03760 319 Gene3D - 17 315 - -
Vimu6g03760 319 Gene3D - 152 266 - -
Vimu6g03760 319 Pfam Zinc-binding dehydrogenase 204 315 - -
Vimu6g03760 319 Pfam Alcohol dehydrogenase GroES-like domain 39 102 IPR013154 -
Vimu6g03760 319 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 160 181 IPR002364 GO:0008270|GO:0016491
Vimu6g03760 319 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 2 319 IPR044626 GO:0016628
Vimu6g03760 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 133 285 IPR036291 -
Vimu6g03760 319 CDD MDR_like_2 10 315 - -
Vimu6g03760 319 SMART PKS_ER_names_mod 20 315 IPR020843 GO:0016491
Vimu6g03760 319 SUPERFAMILY GroES-like 6 167 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03760 Vimu-Chr6 36072645 36075997 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03760 63 97 Monolignol Biosynthesis Gene Families AT1G72680 54.286 7.61e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03760 K18980 - gmx:100817947 553.132