Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03758 ATGGATTGCAGAATAGAGAGTACAGAAACTCACAGGAATAAGTGTGCAGCATGCTTCAGACAGTTCAACAAACTGGAGCACCTTGTGGAGCACATGAGGATCTCCTATCATTCAGTTCATGAGCCAACCTGTGGCATTTGCAGGAAACACTGCAGGTCATTTGAGTCTCTAAGGGAACATCTTATAGGTCCATTGCCAAAGCAGGAATGCAGAGATATATTTGCCTATAGAGGGTGCAAGTTTTGCTTGAAAGTGTTTGACAGCCCTAATTCTCGCAGGATTCACCAAGAAAAATGCCAACACTCTGGAACAAATGCTGTACAACTTTTGACTTTGAACTTCTGTTACATGATAAAAATATGTGCAGGAATAATTGGTCGCTTTTCAAACTTAGGACTTCGTGATAATTTGGCCATTAGTGGTGCAGCAAGAGGACCACAAGTAGTTGCATTAGCATGTAAAATGGTTGGAGGTGGGAGTGATGGCTCATTGGATCTCTGTGGAAGAGTGTGCTTAACCGATGAGCATGAGAACATCATATTCCATTCTTATGTGAAGCCACCAATTCCTGTCACAAACTACAGGTATGAGACCACAGGCATTAGACCAGAATACCTGAGGGATGCAATGCCAATGAGACAAGTTCAAAGGAGAATTCAAGACTTTCTTTGCAACGGTGAACCTATGTGGACGATTCGGGCAAGAGGAGGAAGAGCAAGGATTGTTGTGGGCCATGGTTTGGATCATGACCTTGAATGTCTGCAAATAGAATATCGAACAGAAAAGATAAGGGACACTGCAAAATACCCTCCTCTGATGAAAACGAGCAAGCTCAGCAACTCACTCAAGTATGACATTCAAGTTGGAATTCAAGATCCTTATGATGACTGTGTGGCAACTATGAGGCTCTACATGAGAATGAGATCCCAAGTACACAGAACACAGGATTACCCTTTGGTGTCTGACCCCCAGAACAGGAACAATTTTGCTTCGTGGAGGCAAAGTGATCTTGAAAGAATGACTCCTGAACAAATGCTGGAAATATCAAGATCTGACTACTATTGCTGGTGCTTGGATTCCTTCTATCCCTGA 1092 0.4295 MDCRIESTETHRNKCAACFRQFNKLEHLVEHMRISYHSVHEPTCGICRKHCRSFESLREHLIGPLPKQECRDIFAYRGCKFCLKVFDSPNSRRIHQEKCQHSGTNAVQLLTLNFCYMIKICAGIIGRFSNLGLRDNLAISGAARGPQVVALACKMVGGGSDGSLDLCGRVCLTDEHENIIFHSYVKPPIPVTNYRYETTGIRPEYLRDAMPMRQVQRRIQDFLCNGEPMWTIRARGGRARIVVGHGLDHDLECLQIEYRTEKIRDTAKYPPLMKTSKLSNSLKYDIQVGIQDPYDDCVATMRLYMRMRSQVHRTQDYPLVSDPQNRNNFASWRQSDLERMTPEQMLEISRSDYYCWCLDSFYP 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03758 363 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Vimu6g03758 363 SMART c2h2final6 13 37 IPR013087 -
Vimu6g03758 363 SMART c2h2final6 42 62 IPR013087 -
Vimu6g03758 363 SMART c2h2final6 77 101 IPR013087 -
Vimu6g03758 363 Pfam Exonuclease 171 269 IPR013520 -
Vimu6g03758 363 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
Vimu6g03758 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Vimu6g03758 363 SMART exoiiiendus 147 313 IPR013520 -
Vimu6g03758 363 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 359 IPR047021 GO:0004527
Vimu6g03758 363 Gene3D - 145 322 IPR036397 GO:0003676
Vimu6g03758 363 CDD REX4_like 149 304 IPR037431 GO:0006364|GO:0008408
Vimu6g03758 363 SUPERFAMILY Ribonuclease H-like 165 309 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03758 Vimu-Chr6 36067003 36068939 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03758 1 361 C2H2 Transcription Factor Family AT3G27970 68.280 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03758 - - gmx:100813973 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03758 6 36067003 36068939 Vimu6g03758 6 36067003 36068939 ECH