Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03744 TTGCCTCTATTTAAACCTGCCAAACACTTATTAACATTTCAATATCTCTTCACCTCTTCTCTCTCTCTCTATTTCCTCGTACTAAATAATATGGATAAGAAACTAACTAGCGTGTCTCACGATCCTGAGGTGAGAAAGGGACCATGGACAATGGAAGAAGACTTAATCTTGATCAACTACATCGCAAATCATGGGGAAGGTGTTTGGAACTCTTTGGCCAAAGCTGCCGGTCTTAAACGTACTGGAAAAAGCTGCCGGCTCCGGTGGTTAAACTACCTCCGTCCCGATGTTAGAAGAGGGAATATTACACCCGAGGAACAGCTCTTGATCATGGAGCTTCATGCAAAGTGGGGAAACAGGTGGTCCAAAATTGCCAAGCAGCTACCCGGAAGGACTGATAATGAGATCAAGAACTTCTGGAGGACAAGGATTCAGAAGCACATGAAGCAAAGTGAGAGCTTTCAGCAGCAGAGTAATTCTGAGACAAATGATCATCAAGCTTTCACTAGCCAAGTGACCACCATTGCTGAGCCCATGGAGACCTATTCTCCATCCTGTTATCAAGGAATGCTAGAACCATTCTCAACTCAGTTCCACACAAATCCTGATCAATCCAGTTGTTGTACAAACGACAACAACAACAACTACTGGAGCATGGAGGATATCTTATCAATGCAGTTAGCCAATTACTAA 693 0.4343 MPLFKPAKHLLTFQYLFTSSLSLYFLVLNNMDKKLTSVSHDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKQLPGRTDNEIKNFWRTRIQKHMKQSESFQQQSNSETNDHQAFTSQVTTIAEPMETYSPSCYQGMLEPFSTQFHTNPDQSSCCTNDNNNNYWSMEDILSMQLANY 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03744 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 93 IPR017930 -
Vimu6g03744 230 CDD SANT 103 142 IPR001005 -
Vimu6g03744 230 FunFam Myb transcription factor 46 98 - -
Vimu6g03744 230 CDD SANT 48 93 IPR001005 -
Vimu6g03744 230 ProSiteProfiles Myb-like domain profile. 94 144 IPR001005 -
Vimu6g03744 230 SUPERFAMILY Homeodomain-like 43 140 IPR009057 -
Vimu6g03744 230 FunFam Myb-related protein 305 103 172 - -
Vimu6g03744 230 Gene3D - 46 98 - -
Vimu6g03744 230 ProSiteProfiles Myb-like domain profile. 41 93 IPR001005 -
Vimu6g03744 230 SMART sant 98 146 IPR001005 -
Vimu6g03744 230 SMART sant 45 95 IPR001005 -
Vimu6g03744 230 Gene3D - 103 172 - -
Vimu6g03744 230 Pfam Myb-like DNA-binding domain 99 142 IPR001005 -
Vimu6g03744 230 Pfam Myb-like DNA-binding domain 46 93 IPR001005 -
Vimu6g03744 230 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 41 183 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vimu6g03744 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 148 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03744 Vimu-Chr6 35851797 35856372 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03744 44 229 MYB Transcription Factor Family AT3G01530 57.979 1.86e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu6g03744 Myb_DNA-binding 8.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03744 K09422 - gmx:778048 350.132