Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03743 ATGCACACTCCTGTACCCTCTTTTCGACAACGCATTTCTACAACCGAGTGGTCAAAAATTGCCAAGCATCTACCAGGAAGGACTGATAATGAGATAAAAAACTACTGGAGGACCAGGATTCAGAAGCACATCAAGCAAGCCGAGAACTCTCAGCAACAGAGTAATTCTAATTCTGAGATAAATGACCATCAAGCTAGCACTAGCCAAGTGTCCACCATGGCTGAGCCCATGGAGACCTACTCTTCACCCTGTTACCAAGGAATGTTAGAGCCATTTTCTACTCAGATTCCCAATATTCCAGATCAATCCAGTTGTTGTACCAATGAAAACAACAATTATTGGAGCATGGAGGATATCTGGTCAATGCAGTTACTGAACGGGGATTAA 387 0.4315 MHTPVPSFRQRISTTEWSKIAKHLPGRTDNEIKNYWRTRIQKHIKQAENSQQQSNSNSEINDHQASTSQVSTMAEPMETYSSPCYQGMLEPFSTQIPNIPDQSSCCTNENNNYWSMEDIWSMQLLNGD 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03743 128 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 16 73 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vimu6g03743 128 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 44 IPR017930 -
Vimu6g03743 128 Gene3D - 8 71 - -
Vimu6g03743 128 ProSiteProfiles Myb-like domain profile. 10 40 IPR001005 -
Vimu6g03743 128 MobiDBLite consensus disorder prediction 45 75 - -
Vimu6g03743 128 CDD SANT 17 38 IPR001005 -
Vimu6g03743 128 Pfam Myb-like DNA-binding domain 16 38 IPR001005 -
Vimu6g03743 128 SUPERFAMILY Homeodomain-like 15 48 IPR009057 -
Vimu6g03743 128 MobiDBLite consensus disorder prediction 44 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03743 Vimu-Chr6 35790621 35791286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03743 16 128 MYB Transcription Factor Family AT3G27810 48.855 9.07e-27 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu6g03743 Myb_DNA-binding 2.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03743 K09422 - gmx:778048 201.83