Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03741 TATATGGCCTCTACTATTGGTAAACCGGGTGATGATTCCACGATTGTTGAAAAGCTCCCGGAGGAGATTAATGAAATGAAGATCAAGGATGAAAAGGAAATGGATACTGCAATGGTGGATGGAAATGGAACTGAAACTGGCCGTATTATTGTGACCACTATTGGTGGTCGACAAGGTCAACCTAAACAGGCTAAATGTCTTGAAACTGGAGAAACTGTAGCAATCAAGAAAGTTTTGCAGGATAAAAGATACAAGAATCGTGAATTGCAAACAATGCGCCTTCTTGATCATCCCAATGTTGTATCACTAAAACATTGCTTCTTTTCTACCACAGATAAAGATGAACTCTATCTCAATTTGGTACTTGAATATGTACCTGAGACTGTATATCGTGTGGTGAAGCACTATAGCAAGGCAAATCAGCGGATGCCCCTAATATATGTTAAACTTTACACATATCAGATCTGTAGAGCCTTGGCTTATATTCATGGATGTGTTGGAGTGTGCCACAGGGACATTAAGCCACAGAATCTGCTGGTAAATCCTCATACACATCAGGTCAAACTTTGTGATTTTGGGAGTGCAAAAGTTCTGATCAAGGGTGAACCTAACATATCGTATATCTGCTCCCGATACTATCGAGCTCCTGAACTCATATTTGGAGCCACTGAGTATACTACTGCAATTGATATGTGGTCTGTTGGTTGTGTGCTGGCTGAGCTGCTCCTGGGGCAGCCTCTGTTTCCAGGAGATAGTGGAGTTGATCAACTTGTTGAAATTATCAAGGTACTCGGGACTCCAACTCGTGAGGAAATAAAATGCATGAATCCAAATTACACAGAGTTCAAGTTCCCTCAAATCAAGGCTCACCCCTGGCATAAGATATTCCACAAGCGTATGCCCCCAGAAGCAGTAGATCTTGTTTCAAGGCTTCTCCAGTATTCTCCAAATTTACGAAGTACTTCTTTGGATGCATGTGTTCACCCATTTTTTGATGAACTCCGCGACCATAATACCCGTCTCCCTAATGGGCGCCCTATGCCACCCCTCTTTAATTTCAAACCTCAAGAGCTGAAGGGAGTGACTTTGGAGCTGCTATGCAAACTTGTTCCAGAACATGCTCGGAAACAGTGTCCTTCCCTTAATTTCTAG 1152 0.4245 YMASTIGKPGDDSTIVEKLPEEINEMKIKDEKEMDTAMVDGNGTETGRIIVTTIGGRQGQPKQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTDKDELYLNLVLEYVPETVYRVVKHYSKANQRMPLIYVKLYTYQICRALAYIHGCVGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLIKGEPNISYICSRYYRAPELIFGATEYTTAIDMWSVGCVLAELLLGQPLFPGDSGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRSTSLDACVHPFFDELRDHNTRLPNGRPMPPLFNFKPQELKGVTLELLCKLVPEHARKQCPSLNF 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03741 383 FunFam Shaggy-related protein kinase kappa 127 375 - -
Vimu6g03741 383 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 33 377 - -
Vimu6g03741 383 Gene3D Transferase(Phosphotransferase) domain 1 127 375 - -
Vimu6g03741 383 CDD STKc_GSK3 63 334 IPR039192 -
Vimu6g03741 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Vimu6g03741 383 ProSiteProfiles Protein kinase domain profile. 47 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03741 383 Gene3D Phosphorylase Kinase; domain 1 51 126 - -
Vimu6g03741 383 Pfam Protein kinase domain 56 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03741 383 SUPERFAMILY Protein kinase-like (PK-like) 57 356 IPR011009 -
Vimu6g03741 383 SMART serkin_6 48 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03741 Vimu-Chr6 35739671 35744383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03741 56 334 Core Cell Cycle Gene Families AT1G76540 34.495 1.08e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vimu6g03741 Pkinase 1.8e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03741 K27413 - qsa:O6P43_008947 735.332