Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03739 ATGCAGAAGGAGTCATGGAGCGTAGAGGAGGACAAAATCCTGATCGAAGCTCACAAGGAACTCGGGAACAAATGGGCAGAGATTGCAAGGAGAATGCCGGGAAGGACCGAAAACACCATCAAGAACCACTGGAACGCCACCAAGCGTCGCCAGAAGGCCAAGAGGCAGAGGAACAAGCGCAGGAGCTCCAAGGGTTCACCCACGCTACTCGAGAGCTACATAAGGAAAGTCACTGCGGCGGAAGAATCTGAGAAGGAGTTGAAGAACTCCATGAGCAAGATGAACCTGAATGACACCACCAAAACGGGTCTCTTTCGGGTTCGGTACGAGAGCTCCGAAGGTGACTTCAGCTCCGAGGAGGAGGAGCTTGGCTGGACCCTGCAGCACCACGTGCCATGTGGTGGTGATGGTGGTTATGTGCCAGTGATGGTGAACGCTGGGGAAGAGAACGCCATTGATTACGAGGTTGCCATGCAGATGGTTCCAGAGGTCCAGATGAGGAAGGAGATGGATCTCATGGAGATGATCTATAGAAAAGGTTAA 543 0.5285 MQKESWSVEEDKILIEAHKELGNKWAEIARRMPGRTENTIKNHWNATKRRQKAKRQRNKRRSSKGSPTLLESYIRKVTAAEESEKELKNSMSKMNLNDTTKTGLFRVRYESSEGDFSSEEEELGWTLQHHVPCGGDGGYVPVMVNAGEENAIDYEVAMQMVPEVQMRKEMDLMEMIYRKG 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03739 180 PANTHER MYB PROTEIN-RELATED 2 66 - -
Vimu6g03739 180 MobiDBLite consensus disorder prediction 32 71 - -
Vimu6g03739 180 CDD SANT 5 48 IPR001005 -
Vimu6g03739 180 ProSiteProfiles Myb-like domain profile. 1 48 IPR001005 -
Vimu6g03739 180 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 52 IPR017930 -
Vimu6g03739 180 Coils Coil 70 90 - -
Vimu6g03739 180 SMART sant 2 50 IPR001005 -
Vimu6g03739 180 Pfam Myb-like DNA-binding domain 3 45 IPR001005 -
Vimu6g03739 180 Gene3D - 5 69 - -
Vimu6g03739 180 SUPERFAMILY Homeodomain-like 3 54 IPR009057 -
Vimu6g03739 180 MobiDBLite consensus disorder prediction 45 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03739 Vimu-Chr6 35705936 35706478 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03739 1 77 MYB Transcription Factor Family AT4G18770 64.935 7.30e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu6g03739 Myb_DNA-binding 2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03739 K09422 - gmx:100793032 220.705