Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03719 ATGGACTTCCCAGGGAACATCTTCTGCCTCTCCAACAGAGACCAAAATGGGAATACTAACGCCAACACTTTCGCCTGGGATTCATGGCAAACAACCACTTCTAATAATAACCCCAACACTTCCAGGTTCCTCAACGCTTTCAACGCCCCCGTCACTCCCCTCGCCGCTCCGGAGGGGTCCGCCGCCAACCGCCCCGAGGCCGCCGGTCTCGCCAGCGCTCTCATGTTTCTCCCTCAAAACGGCGGCGTTTTGCGACACCGCCACCAGCACCAGCAACAGCAACAGCAGCACCATCATCATCCGTACGGAGGGGATGGGTCCCACGTGCACCCCGACCCCCACCTCATGTGCTTGAAGCTTGGGAAGAGGCATTACTTTGAGGACGCTAGTGGAAGTGGAACCGTCTCTTCTTCTTCTTCTTCTTCTGCTGCTGCTGCTGCTACTTTTGGCGGAGGGTTGGTGTTGGGGGATAAGCGTGGGAAAGGAGGGTATTCCGGCGGCGGGGCGGCGGTGAAAACTGTCGGGTTGACTACGGCGACGGTGCCTCGGTGTCAGGTGGAAGGGTGCCAGGTGGCGCTGGTGAACGCCAAGGACTACCACCGGAGGCACAAGGTGTGTGAGATGCACTCCAAGGCTCCCAAAGTTGTGGTCTTAGGGTTGGAGCAGAGGTTCTGTCAGCAGTGTAGCAGGTTTCACGTGGTGTCAGAGTTTGATGATTCAAAGAGAAGTTGCAGGAGGAGACTAGCAGGTCACAATGAGAGAAGAAGAAAGAGCTCCCATGATTCTGTTGCAAGGAATTCTTCACAAGGAGGGTGTGCTCTCTCTCTTCTGTCATCTAGAAGTGATTCTTGGCTTTCACCTTCTGATCTGTCAACAAGATGCAGTGCAGCATTGCGTGAATTGATAGCAGAAAACCGTGCAGCCATAATGGCGAGACAATTTGTATCAGACAGAGATTGGCATATTCAGCATCATGAAGTGGAAGACTTGAAGGAGATCCAACCGGAGTCCAATTACTTCCCACAACAGATGTTTCCACAGACACAGTGA 1050 0.5371 MDFPGNIFCLSNRDQNGNTNANTFAWDSWQTTTSNNNPNTSRFLNAFNAPVTPLAAPEGSAANRPEAAGLASALMFLPQNGGVLRHRHQHQQQQQQHHHHPYGGDGSHVHPDPHLMCLKLGKRHYFEDASGSGTVSSSSSSSAAAAATFGGGLVLGDKRGKGGYSGGGAAVKTVGLTTATVPRCQVEGCQVALVNAKDYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVARNSSQGGCALSLLSSRSDSWLSPSDLSTRCSAALRELIAENRAAIMARQFVSDRDWHIQHHEVEDLKEIQPESNYFPQQMFPQTQ 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03719 349 FunFam Squamosa promoter-binding-like protein 14 176 245 - -
Vimu6g03719 349 ProSiteProfiles Zinc finger SBP-type profile. 181 258 IPR004333 GO:0003677
Vimu6g03719 349 MobiDBLite consensus disorder prediction 248 269 - -
Vimu6g03719 349 Gene3D - 176 245 IPR036893 GO:0003677|GO:0005634
Vimu6g03719 349 Pfam SBP domain 184 257 IPR004333 GO:0003677
Vimu6g03719 349 SUPERFAMILY SBT domain 182 263 IPR036893 GO:0003677|GO:0005634
Vimu6g03719 349 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 131 283 IPR044817 GO:0003677
Vimu6g03719 349 MobiDBLite consensus disorder prediction 84 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03719 Vimu-Chr6 35334972 35339423 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03719 116 257 SBP-box Gene Family AT1G27370 50.704 1.21e-38 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vimu6g03719 SBP 6.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03719 - - var:108327478 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03719 6 35334972 35339423 Vimu6g03719 6 35334972 35339423 ECH