Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03717 ATGTTGGATTACGAATGGAATTCATCAATGATACTCCTCGCCGGCAATGAAGTCGCCGTCGCCGAACCCGACCAAACGCGCCGGCAAATTTTCGACCACAACTTTCCCATGTTAACTGAACCCATTCTACATGCCTCAACACCAACAGCCACCACTGGTTTCTCGATTCACCACCCGTTCAACCCACCACCACAACAGCAGCACCACCATCACAACCCCCAGCAGGCCTTCTTCGACCCACGCGCCTTCCAAAGCGCGTCCACCGCTTCCTTCTCGCCACCACCTTCGGTGCTCTCACTTAACCCAATCCCACCTTTAGCTCCCTCCCACTGTGGCCTTGGGCCTGGCTCCGGGCTTGGGTTTCTGCTCATGTCCAAGTCTGAGGATGTGACTTCGCCCGTTAACTTTGACTGCTCTGGTCATGGTCTCGGGCCTGGACCCGGGCTTGGACTGAACCTCGGTGGTCGCACTTATTTTGCGGCTTCCAACGAAGACACCCTGGACAGATTCTACCGTTGCAAGACGGTGGAATCGGTTTCCACCGTGGCGTCAAATTTGCCACGCTGTCAAGCAGAAGGATGTAACACGGACCTTTCCGAAGCCAAGCACTACCACCGCCGTCACAAGGTGTGTGAGTTCCACTCGAAGGCCGCCACCGTCATTGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAGTGCAGCAGGTTGTGGTCTTTAGGGGAGGGCGTTTTACAAAATTTCGAATTTGCCACTGGCCGTTGTAGTTTGAACCAATCATTGGCTTCGGGATTCCATCTTCTTTCAGAATTTGACAATGGGAAACGGAGCTGCAGGAAGAGACTGGCAGATCACAATCGTCGCAGAAGAAAAACTCAGCAGGCAACTCAAGACATTCACAAATCTCAGCCTTCTTTGGACAATGTTACATGGTCCTCTTCTGAATCTGGAGCTCAATCTTCGTCATCAATGAAGGTGGAAGTGTCACCCCCAGATTATTTCCAGCAAAATAGAGGCACTTCGTCAACATCATCATCTGGGTCATTATTTTTCTCAAGTGGGGCCAATTTGCATGGCTAA 1077 0.5227 MLDYEWNSSMILLAGNEVAVAEPDQTRRQIFDHNFPMLTEPILHASTPTATTGFSIHHPFNPPPQQQHHHHNPQQAFFDPRAFQSASTASFSPPPSVLSLNPIPPLAPSHCGLGPGSGLGFLLMSKSEDVTSPVNFDCSGHGLGPGPGLGLNLGGRTYFAASNEDTLDRFYRCKTVESVSTVASNLPRCQAEGCNTDLSEAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRLWSLGEGVLQNFEFATGRCSLNQSLASGFHLLSEFDNGKRSCRKRLADHNRRRRKTQQATQDIHKSQPSLDNVTWSSSESGAQSSSSMKVEVSPPDYFQQNRGTSSTSSSGSLFFSSGANLHG 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03717 358 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 169 344 IPR044817 GO:0003677
Vimu6g03717 358 Gene3D - 184 278 IPR036893 GO:0003677|GO:0005634
Vimu6g03717 358 SUPERFAMILY SBT domain 187 241 IPR036893 GO:0003677|GO:0005634
Vimu6g03717 358 ProSiteProfiles Zinc finger SBP-type profile. 186 291 IPR004333 GO:0003677
Vimu6g03717 358 MobiDBLite consensus disorder prediction 296 358 - -
Vimu6g03717 358 Pfam SBP domain 189 240 IPR004333 GO:0003677
Vimu6g03717 358 Pfam SBP domain 263 290 IPR004333 GO:0003677
Vimu6g03717 358 MobiDBLite consensus disorder prediction 282 358 - -
Vimu6g03717 358 SUPERFAMILY SBT domain 262 294 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03717 Vimu-Chr6 35288896 35290958 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03717 1 236 SBP-box Gene Family AT1G02065 39.600 9.45e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vimu6g03717 SBP 7.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03717 - - var:108328505 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03717 6 35288896 35290958 Vimu6g03717 6 35288896 35290958 ECH