Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03716 ATGGCACGCTTGTCCCGGTCCTCCGCACCGCGCCTCCTTTACGCGCTCTGCTCCACCTCGTCGCGGTCCCCAGCAGCGTTCCTCCTGGGCGGCTCCTTCCAGCTCCGGCAGTTTTCGGCCGGTAACGCTGCGCGTTCGAACTTGGAGAAGGATCCATGGTGGAAAGAGTCGATGGAGCGGCTCCGCAACATCGGTATCTCGGCGCACATCGACTCCGGGAAGACGACGCTGACGGAACGGGTTCTTTACTACACGGGTCGGATCCACGAGATCCACGAGGTTAGGGGCAGGGACGGCGTTGGCGCTAAAATGGACTCTATGGACTTGGAGAGGGAGAAGGGAATCACAATTCAGTCTGCTGCCACATACTGCACTTGGAAGGACTATAAGATTAACATTATTGACACACCTGGTCATGTTGATTTTACCATTGAGGTTGAGAGGGCTTTGCGTGTCCTTGATGGTGCCATTCTCGTTCTTTGTAGTGTTGGTGGGGTGCAAAGTCAGTCCATTACTGTTGATCGGCAAATGAGAAGATATGATGTTCCAAGACTTGCATTTATCAATAAACTTGATCGGATGGGAGCAGATCCATGGAAAGTGTTAAATCAGGCTAGATCTAAGCTTCGACATCATAGTGCTGCAATGCAAGTTCCAATAGGTTTGGAAGAAGATTTTAAGGGACTTGTTGATCTTGTGCAGTTAAAGGCCTACTATTTTCATGGTTCAAGTGGTGAAAAAGTTGTCTCTGAAGATGTGCCTGCAGATATGGAAGCATTAGTGGCAGAAAAAAGACGTGAACTTATAGAAACTGTCTCAGAAGTTGACGATAAACTTGCTGAAGCTTTTCTTGGCGATGAAACCATATCAGCTGCTGATCTTGAGGAAGCAGTTCGTAGGGCTACCATAGCACAGAAATTTATACCAGTATTCATGGGTAGTGCTTTCAAAAACAAGGGGGTCCAGCCACTTCTGGATGGTGTACTTAGCTATTTGCCATGTCCAATTGAAGTTAGTAATTATGCTCTTGACCAAACTAAGAATGAAGAGAAGGTTGAGTTGCCGGGAAGTCCCGATGGGCCACTTGTGGCATTGGCTTTCAAGTTGGAGGAAGGGCGGTTTGGTCAGTTAACATATCTAAGAATATATGAGGGTGTAATTCGGAAGGGTGATTTTATTGTTAATGTAAACACCGGCAAGAAGATCAAGGTTCCACGATTGGTTCGGATGCATTCCGATGAGATGGAGGACATTCAAGAGGCTCATGCTGGGCAAATAGTTGCTGTATTTGGTGTTGATTGTGCATCAGGAGATACTTTTACTGATGGTTCAGTTAAGTACACAATGACTTCGATGAATGTTCCTGAGCCAGTGATGTCGTTAGCTGTTCAGCCAGTCTCTAAAGATTCCGGAGGACAATTTTCAAAAGCTTTGAACCGCTTCCAGAAGGAAGATCCTACATTTCGTGTTGGCTTGGACCCGGAGAGTGGGCAGACAATCATTTCTGGAATGGGAGAATTGCATTTAGATATCTATGTTGAACGCATCAGGAGAGAGTATAAGGTTGATGCTTCAGTTGGAAAGCCCCGTGTTAACTTCAGAGAAACTGTTACTCAACGGGCTGAGTTTGACTATCTGCATAAGAAGCAAAGTGGAGGGCAAGGTCAATATGGACGGGTAATTGGGTATATTGAACCACTTCCTGCAGGGTCATCAACTAAGTTTGAATTTGAAAACTTGCTTGTTGGGCAAGCTATTCCATCAAATTTTATCCCTGCAATTGAGAAGGGTTTCAAAGAAGCTGCCAATTCGGGTGCCTTAATTGGACATCCAGTTGAAAATCTCCGAGTTGTCTTGATAGATGGTGCCGCTCATGCTGTTGATTCCAGTGAACTTGCATTTAAGATGGCTTCTATCTATGCTTTTAGACAGTGCTATGCAGCTTCCAGACCGGTTATATTAGAACCTGTTATGCTTGTTGAGCTGAAAGTACCAACAGAATTTCAGGGAGCCGTTGCTGGTGACATCAACAAGAGGAAAGGTGTGATTGTTGGAAATGATCAGGAAGGAGATGATTCTGTCATCATTGCTCATGTAAGGGCTAGGAGTGGGCAAGGGACCTCTAGAAACGTAAGTACTGCTAGGAAAGAAGGGGCTAGCACTTTGGTAGGCTCTAAGATAGGGAACATTGCACTAGGGGACAGGCCTCATAACCCTCGGAATCTATTTAGAGCGATGGAGTTGGCCAGGGATGTGGAAGAAGTCTCAAAAGGGGCTAGGAGTGGGCAAGGGACCTCTAGAAACGTCCCTCTTAACAATATGTTTGGGTACTCGACAGCTCTTCGTTCAATGACACAGGGTAAAGGTGAATTCACAATGGAGTACAAGGAACATTCACCTGTTTCTCATGATGTACAGACGCAATTGATAAACACGTACAAGGGCAGCAAGGCAGCTGAATAA 2463 0.46 MARLSRSSAPRLLYALCSTSSRSPAAFLLGGSFQLRQFSAGNAARSNLEKDPWWKESMERLRNIGISAHIDSGKTTLTERVLYYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATYCTWKDYKINIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYDVPRLAFINKLDRMGADPWKVLNQARSKLRHHSAAMQVPIGLEEDFKGLVDLVQLKAYYFHGSSGEKVVSEDVPADMEALVAEKRRELIETVSEVDDKLAEAFLGDETISAADLEEAVRRATIAQKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPIEVSNYALDQTKNEEKVELPGSPDGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIVNVNTGKKIKVPRLVRMHSDEMEDIQEAHAGQIVAVFGVDCASGDTFTDGSVKYTMTSMNVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDPESGQTIISGMGELHLDIYVERIRREYKVDASVGKPRVNFRETVTQRAEFDYLHKKQSGGQGQYGRVIGYIEPLPAGSSTKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGALIGHPVENLRVVLIDGAAHAVDSSELAFKMASIYAFRQCYAASRPVILEPVMLVELKVPTEFQGAVAGDINKRKGVIVGNDQEGDDSVIIAHVRARSGQGTSRNVSTARKEGASTLVGSKIGNIALGDRPHNPRNLFRAMELARDVEEVSKGARSGQGTSRNVPLNNMFGYSTALRSMTQGKGEFTMEYKEHSPVSHDVQTQLINTYKGSKAAE 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03716 820 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 105 120 IPR031157 -
Vimu6g03716 820 CDD EFG_mtEFG1_IV 533 648 IPR005517 GO:0005525
Vimu6g03716 820 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 333 IPR027417 -
Vimu6g03716 820 Pfam Elongation factor G, domain IV 529 649 IPR005517 GO:0005525
Vimu6g03716 820 SUPERFAMILY EF-G C-terminal domain-like 768 813 IPR035647 -
Vimu6g03716 820 Gene3D - 746 820 - -
Vimu6g03716 820 CDD EFG_III 455 530 IPR009022 -
Vimu6g03716 820 NCBIfam elongation factor G 57 703 IPR004540 GO:0003746|GO:0005525|GO:0006414
Vimu6g03716 820 FunFam Elongation factor G, mitochondrial 52 339 - -
Vimu6g03716 820 Pfam Elongation factor Tu GTP binding domain 60 333 IPR000795 GO:0003924|GO:0005525
Vimu6g03716 820 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 768 812 - -
Vimu6g03716 820 Gene3D Elongation Factor G (Translational Gtpase), domain 3 461 534 - -
Vimu6g03716 820 SUPERFAMILY Translation proteins 300 452 IPR009000 -
Vimu6g03716 820 CDD mtEFG1_II_like 362 442 - -
Vimu6g03716 820 CDD EF-G 63 335 - -
Vimu6g03716 820 FunFam Elongation factor G 535 671 - -
Vimu6g03716 820 Pfam Elongation factor Tu domain 2 375 441 IPR004161 GO:0005525
Vimu6g03716 820 Gene3D - 651 720 - -
Vimu6g03716 820 FunFam Elongation factor G 458 534 - -
Vimu6g03716 820 SUPERFAMILY Ribosomal protein S5 domain 2-like 529 651 IPR020568 -
Vimu6g03716 820 SUPERFAMILY EF-G C-terminal domain-like 452 529 IPR035647 -
Vimu6g03716 820 Gene3D - 535 650 IPR014721 -
Vimu6g03716 820 PRINTS GTP-binding elongation factor signature 63 76 IPR000795 GO:0003924|GO:0005525
Vimu6g03716 820 PRINTS GTP-binding elongation factor signature 112 120 IPR000795 GO:0003924|GO:0005525
Vimu6g03716 820 PRINTS GTP-binding elongation factor signature 148 159 IPR000795 GO:0003924|GO:0005525
Vimu6g03716 820 PRINTS GTP-binding elongation factor signature 132 142 IPR000795 GO:0003924|GO:0005525
Vimu6g03716 820 PRINTS GTP-binding elongation factor signature 184 193 IPR000795 GO:0003924|GO:0005525
Vimu6g03716 820 NCBIfam small GTP-binding protein domain 61 233 IPR005225 GO:0005525
Vimu6g03716 820 Pfam Elongation factor G C-terminus 768 808 IPR000640 -
Vimu6g03716 820 Pfam Elongation factor G C-terminus 653 700 IPR000640 -
Vimu6g03716 820 Pfam Elongation Factor G, domain III 454 528 IPR041095 -
Vimu6g03716 820 Gene3D - 50 338 IPR027417 -
Vimu6g03716 820 FunFam Elongation factor G, mitochondrial 344 457 - -
Vimu6g03716 820 SUPERFAMILY EF-G C-terminal domain-like 652 700 IPR035647 -
Vimu6g03716 820 SMART EFG_C_a 652 809 IPR000640 -
Vimu6g03716 820 Hamap Elongation factor G [fusA]. 57 813 IPR004540 GO:0003746|GO:0005525|GO:0006414
Vimu6g03716 820 Gene3D Translation factors 343 460 - -
Vimu6g03716 820 SMART EFG_IV_2 530 650 IPR005517 GO:0005525
Vimu6g03716 820 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 59 336 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03716 Vimu-Chr6 35253523 35278697 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03716 377 537 Eukaryotic Initiation Factors Gene Family AT3G22980 24.157 1.07e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03716 K02355 - gmx:100783315 1330.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03716 6 35253523 35278697 Vimu6g03716 6 35253523 35278697 ECH