Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03709 ATGCTAAAACTCAGACATGAACAGGTTTTATTTAATGTTCTCAAAGATCGCTACATAATGCCAAGACGATTGCTGATGACTGGCACACCTATTCAAAATAATCTTTCTGAACTGTGGGCATTGATGTACTTTTGCATGCCTTCTGTCTTTGGTACACCGGATCAGTTCCTTTCTACGTTTAAGGACATCGGTGATCTTTCATCAGTTCATGATGCTCCAAAGGTAAAGGAGAGGCTTAATATTTTAAGAAGTGTATTGGGAGCCTTTATGCTTCGACGTACCAAGTCAAAGCTTATTGAGTGTGGAAATTTAGTTCTACCACCTCTTACTGAGACAACCGTGTTAGTTCCCCTTGTCATCTTGCAGAAAAAGGTCTATATGTCAATATTGAGGAAAGAACTCCATAAGCTACTTGCACTATCATCTGGAACTTCAAATCCTCAGTCACTACAAAATATTGTTAGTCAAGCCTGTTTTGAACATTTACTTTTGCTAATTTTTTGTTCCACTAGTTTTAGGGTGATACAGCTAAGAAAAGCGTGCAGCCATCCTTATCTCTTTCCAGGTATTGAGCCTGAACCTTATGAAGAAGGTGAACATCTAGTTCAGATTACTAAACTTATTGTTAATGCTGCATTTCCCACCATGGTAGCCAGTGGTAAACTACTTATTCTGGACCAACTTCTTCAGAAGTTACATTATTCTGGACACCGTGTTCTTCTTTTTGCTCAGATGACCCATACACTTGACATTTTGCAAGATTTTCTGGAGTTGCGAAAGTATTCTTATGAGCGTCTTGATGGATCAATTAGGGCCGAGGAGCGCTTTGCTGCTATAAGAAGTTTCAGTAGCTCATCAGCTACTTCAGGCTTGACTTCTGAAGCTGAACAAAATGGAGCGTTTGTGTTTATGATCTCAACACGAGCAGGGGGAGTTGGTTTGAATCTTGTGGCTGCTGATACTGTTATATTCTATGAGCAAGATTGGAATCCTCAGGTGGACAAGCAAGCTTTGCAGAGAGCACATAGAATTGGTCAGATGAACCATGTGTTGTGCATAAACCTTGTTACAGAGAAGACAGTGGAGGAAGTAATTATGAGGAGGGCAGAAAGAAAATTGCTTCTGAGCATCAATGTTACTGGTGATAACATTCTCAAACATGATGATGAAGAAACATCTGAAGTTAGAACTGGAGATTTGAAATCCATCATATTTGGTTTACATATGTTAGATCCCACTGAGATTACTGACGGAAATCATAGGGATATGAACTTATCAGAAATTAGTGTTATGGCTGACAAGGTGCTTGCGTTGCGTGACAAACAAATACGCGATACGGATGATAGGAAATTTGAGGTCAATCCAAGAAACATTTTACAAGGTGATGATGTTAAGGAAGGAAGTACTACTTTTTCTCACGATCTTGGTCTCGATGAGGCTTCATATCTTTCTTGGGTTAACAAGTTTGAGGAAGTGTCCAAGTCAAGTTGCAGCTCAATGATAGACTGGAGGAGCAAAAGAAACTCAGAAGAGGAAAAGAGTCTAAAACTTGAGTCTGCAATGAAGAAGGCAGAGGAAAAGAAGCTATCCAGGTGGAAATCTCTTGGATATCAATCATTGAATGTAAAATACCCTCTCACCCAAACAGACAATGATATTACATCATCTACTGGGTCCGTTCATTTTGTGTATGGAGATTGTACAGCTCCATCAAACGTTTGTTCATCTGAACCAGCTATGATTTTCAGGTCAACTTTCTTTTTTTGCCTCACTGCAGCTTTTTGTTGTGATGTTCCAGCTTTCTGTGTGAGCTTTCTTCGGTTTCGCTGTGTTGACACGTCTGGACATTGGGGCCACGGTGGAATGTTTGATGCACTGTCCAAACTTTCTACAAGCATTGGTGATGCATATGAACGGGCTTCTGAGCATGGGGATCTGCATCTTGGTGATCTGCATCTTATAAGGCTTGATGATGGTTATCAAGAACAAGATATGACTGGAAATACTCCCAAGATGGTTGCTTTAGCTGTGGTTCAATCATATAATCCAAGGCGCAAAATTCCACGCAGTGAAATCTCACTTCCCCATTTGGAAAGCTGCTTATCTAAGGCAGCATTCTCAGCAGCTCAGAATTCTGATATTATTATCGAAGATCAAGTTAAGGCTCTTTCTCACTTCCTAAACTCAATATAG 2193 0.4008 MLKLRHEQVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTPDQFLSTFKDIGDLSSVHDAPKVKERLNILRSVLGAFMLRRTKSKLIECGNLVLPPLTETTVLVPLVILQKKVYMSILRKELHKLLALSSGTSNPQSLQNIVSQACFEHLLLLIFCSTSFRVIQLRKACSHPYLFPGIEPEPYEEGEHLVQITKLIVNAAFPTMVASGKLLILDQLLQKLHYSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFAAIRSFSSSSATSGLTSEAEQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEKTVEEVIMRRAERKLLLSINVTGDNILKHDDEETSEVRTGDLKSIIFGLHMLDPTEITDGNHRDMNLSEISVMADKVLALRDKQIRDTDDRKFEVNPRNILQGDDVKEGSTTFSHDLGLDEASYLSWVNKFEEVSKSSCSSMIDWRSKRNSEEEKSLKLESAMKKAEEKKLSRWKSLGYQSLNVKYPLTQTDNDITSSTGSVHFVYGDCTAPSNVCSSEPAMIFRSTFFFCLTAAFCCDVPAFCVSFLRFRCVDTSGHWGHGGMFDALSKLSTSIGDAYERASEHGDLHLGDLHLIRLDDGYQEQDMTGNTPKMVALAVVQSYNPRRKIPRSEISLPHLESCLSKAAFSAAQNSDIIIEDQVKALSHFLNSI 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03709 730 SUPERFAMILY Macro domain-like 609 711 IPR043472 -
Vimu6g03709 730 Coils Coil 507 527 - -
Vimu6g03709 730 SMART helicmild6 250 345 IPR001650 -
Vimu6g03709 730 Pfam Helicase conserved C-terminal domain 221 345 IPR001650 -
Vimu6g03709 730 Gene3D Leucine Aminopeptidase, subunit E, domain 1 605 720 IPR043472 -
Vimu6g03709 730 CDD SF2_C_SNF 216 356 - -
Vimu6g03709 730 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 609 711 IPR031053 GO:0003678|GO:0006281|GO:0006338
Vimu6g03709 730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 93 IPR027417 -
Vimu6g03709 730 Pfam SNF2-related domain 20 150 IPR000330 GO:0005524|GO:0140658
Vimu6g03709 730 Gene3D - 169 450 IPR027417 -
Vimu6g03709 730 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 48 IPR014001 -
Vimu6g03709 730 Gene3D - 3 103 IPR038718 -
Vimu6g03709 730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 395 IPR027417 -
Vimu6g03709 730 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 224 392 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03709 Vimu-Chr6 35135167 35160306 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03709 217 401 RAD5 or RAD16-like Gene Family AT5G22750 33.333 1.90e-21 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu6g03709 SNF2_N 3.5e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03709 K20092 - gmx:100797182 970.304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03709 6 35135167 35160306 Vimu6g03709 6 35135167 35160306 ECH
Vimu10g02696 10 38380782 38381090 Vimu6g03709 6 35135167 35160306 PCT