Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03708 ATGATAGGGGTAACAAATAAGGAGGAATTAATTCCAGTAGAAGAGGCCATTTTGAAACTGGGAAAAGAAACAGGACTTAAGGTTTCAAATAATGTGAGGGAGGAAACCCTAGGTATGAGCCAAAGCCAACGAAACGGAAAAACAAGAACCAAAACACATTCAAGAAGTTCCGGTGAGACGATCGACAGTGACACAACTTGTCGGAGAGAAGTGGCACATGACGGCGCATGCGAGGCCTCTGAGGAGGGGACCACCAGGAGAAAGCAACGTTTGACGGCGGCAACAACAGTGGACAACGGAGTGAACGGCAGAAACGACAAAGTGATGACGTCACCGACAATAGATGAGAAAGACCTAGAGGAAAACGCAATAGGAGGAAAAGAAAATAATGAAGTGATTGGAATCGGACATAAATGGCAATCACATGAAAAGTCCTCTTCAAAACGTAGTAGTATGGTTGTCTTGTTGCCTTTTGATGTGCTATTAACTTCATATGACATTGCACTGGTGGATCAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATCATTGATGAAGCTCAGAGACTTAAAAATCCGTCTAGTGGGCTAGATTCCGCTGCAAGAAGCGCACCGCCGCCACTGTCCGACCATCGCCGCTGCCACCGTCGCCAGTCGGGGTCGTTGATAGGGCAGAAAGGTGCGCCCAACACCGGCGATCTCAGAGCCGGAAGTCGCTCCTCGAACGGAGCTGCCACGCGCCGCCACGCGCCGCCACCGTCGCCGGCGCGTGTAACCCACGCGCCACCCTCCGGCGAGACCCACTCGCCGGCGCCGCCACAGACAGGGTCGCCGGAGCCCCCTGAGTCCGTTCCTAGGGGCGCCGCCACAGAAGGGTCGCCGGAGCCTCCTGATTCTGTTCCTTGGGTTGTAGATCTGAGTTTGAAGTTTTTGCCCTTTTTTATTGGATACGGGATGTCTGAAGAAAAGAGTATTCCTTTCGGGGTACCCAATGACTTACCAAATATAGGAAGTACCTCGTGGCTGGATGGTCAAAATTACTTACAATGGAGTCAATTTATTTTAAGGATTCTCAAGAGTCGCTCCAAACTTGATCATATACATGGAGGAGGACCGGCACCAGATGACAAACATTTTTCAATGTGGGATAGAGAAGATTCTTTAATTATGACTTGGATGTGGCAATCCATGTCTCCAGAAGTAAGGAAAAATTATATGTTCCACTCTTCTGCAAAAGAAATATGGGATGATTTACAGAGTACTTTTTCTTTAAAAAAGAATCTTGCTGCTACCTATGATATCAAGAACAGGATATTTAATACAAAACAGGACTCCCTTTCTGTAACAGAGTATCACGGGATCCTGAATGGTCTTTGGATGGAACTAGATCAGATCCAAACAATAAAGATGTGTAAAACAGATGCTGCTGTTCTTGCTGAATTCATGGAAGGAGAAAAAATCTTTAAATTTCTCCAGGGCCTTAATCATGAATACGACCCAATCCGGGTTCAAATTTTTGGAAGAGAAAAATTACCACCCCTGTCAGAAGTTTTTTTTATGGTAAGAGGAGAAGAAACTCGGAGATCTGTCATGCTTCATGGAGGGATCTCCAACACAGGCTCTGCCATGACAACTGGAAAGGGAGTCCACAAGGGAACAAATGCTGGGGGAAAAACGTTTGAAAAAGGTACTAATGGGGACTATTGTACATACTGTAAAAGATCTGGACATACCAAGGAAATATGCTTCAAACTCCATGGAAAAAAGAATGTTCTCGAGCGCATTGGAAACAACAAAGGGCCTACTAAAAAATGGGTAAATCATACTACCTCAGAACGGGAAGCCACAAATCAATCTAATCCGTCCCAGTCTAATCCACCACCACCACCTCCAGATCTTGATATGCAAACTTATAAGGAGAAACTCGAACGCTTGGAAGCAATGATTGAATCAATGAGTAAGCCCTCTGGATCATGTACTCTGTCCATAAAAGGTAAGATTTGTCTCAATACTGTTGGTCATGTGTCTCACGGTATTTGGATCCTTGATTCGGGTGCAACTGATCATATGACACCGTTTAGTGGGAATTTCGATTCATATAGCAAGAGCAATAAAGAACAAATTATTACAGTTGCAAATGGACAGGGTGTACCTGTATGCGGCTCTGGGAATATATTCCTGGACTCATCTATTGTATTGAAGGATGTTTTACATGTTCCTCAATTAGCTAATAGTCTTATCTCTGTGCAAAAGTTCACCAAGGATTTAAATTGTTCAGTAATATTTTTTCCAACTTATTGTGTTTTTCAGGATCTTGCCACGGGGAAGACGATTTTAACTGCTAAGGAGCAAAGTGGGTTGTATTTTTTAGAGTTTGATAACCAAAGCAACACACAAATCCTGAGTCAACAAGCTACATCCGAGACGTGGGCTAAATCACAAATATGGTTACATCATCAAAGGCTTGGGCATCCATCATTTAGTCTTATCAAGTCCCTGTTTCCCCATTTGTTTACCAAGGAGTCTGTTGAGTCTTTTAATTGTGATATTTGTCAATTGTCAAAACACCATCGTGCATCTTATCCTATTAGTAATAAAAAGAGTATTTCTCCATTTGATTTAATTCATTCTGATGTTTGGGGTCCTGTCATAGATTCTATTTCTGGAGCCAAATGGTTCGTTATCTTTATTGATGATTGTACTCGTGTCACGTGGACATACCTTATGAAAAATAAATCTGAAGTTTTTCAAATTTTTGTTAACTTTTTCCGCCTTGTCCAAACTCAATTTGGAAAAAATATAAAAAAAATTAGGTCTGATAATGGTACTGAATATGTAAATCATGAATTTCTCAAGTTTTTGTCTCATAATGGTATTGTTCACGAACTAACCTGTGTTAACACTCCTCAACAAAATGGGGTTGCTGAAAGAAAGAATCGTCATCTTCTTGAGGTAACTAGAGCTCTTCTTTTTCAAATGTCTGTTCCCAAACATTACTGGGGAGAAGCTGTGTTAACTGCCACATATCTCATCAACAGGTTACCCACTCGTACCTTAAATGGCATTAGTCCTATAGAGTCTCTATTGTCTTTTGTTCCTTCTTCTTCCCTTACAACGAGTCTACCTAGTCGAGTCTTTGGATGTGTTGTTTTTGTTCACTCTCATCCTCCTAACCGTGGTAAATTAGATCCCCGAGCCCTTAAATGTGTCTTTATTGGGTATCCTTCTAATAAAAAAGGGTACAAATGTTATCATCCTCCAAGTCGTCGTGTCTTTATCACCATGGATGTCACCTTTCATGAAACCAAATCCTTTTATGTCAGTTCACCACTTCAGGGGGAGAAAGCACTTGAAGTGGATGAACTCTCCTTCTTGTCATTACCATGTTTGTCTTTGCAGGATGCCCAAGACCTGAGCAATGAAGCAACCATAGTCCACAGTGAACAAGAAGAGGAAGACAGATTTTTTGGCAAAAAATATGCAAGAAGAGAACAACCCACTTCGACTCTAGAGCAAGAAGAATTGTCTGATCCGGAGGTGAGTATCCCTGAAGATATCAATGAGGAGGAGGTAAGTATTACTGAGGATTTACCCATTGCATTGAGAAAGGGAAGAAGATCATGTGCTAAATATCCTATTTCTCAGTATGTTTGCACTAACAATCTCTCTGATAAGCACAAAAGTTTTATTGCTGCCATTGATGCCACAGAAATACCTACCTCAATCCAGGAGGCCATGAAACTTGAACATTGGAATCAAGCTATGAAAGAAGAGATGAATGCATTAGAAAGAAATTCAACTTGGGAGATTGTTGATAAGCCAAGAGACAAGAAGACAGTAGGGTGTAGATGGATATTCACAGTCAAACATAAGGCAGATGGGACAATAGAAAGATATAAAGCTAGATTGGTGGCAAAAGGATATACCCAGACATATGGGATTGATTATGAGGAGACATTTGCCCCAGTGGCAAAGATGAATACAGTTCGAGTTATTCTCGCTTTGGCTGCCCATTTTGGATGGGACTTACACCAGCTGGATGTGAAGAATGCCTTTCTTCATGGAGATTTAGATGAGGAAGTGTACATGGAGATTCCTCCAAGGTTTGAAGTGAAAAATGAAAGGAACAAGGTATGTCTCCTAAAGAAAGCATTGTATGGTCTTAAACAATCCCCCAGAGCATGGTTTGGAAAATTTACAAAAGCAATGGTTTCCTTGGGATACAGACAAAGCCAAGGAGATCATACTCTATTCATAAAGCACTCTTCTACAGGTAAACTCACTTTATTGCTTGTCTATGTGGATGATATGATTATTGCAGGAGATGATGAAACAGAAAAATTGGCATTAAAGGAAAAATTGGCAGCTCAATTTGAAATGAAAGACCTAGGAAAACTCAAATATTTTCTTGGAATAGAGGTTGCCTACTCCAAGAATGGAATTTTCATCTCCCAGAGGAAATATGTACTTGATCTCCTCAAAGAAACAGGAAAGTTGGGATGTAGAACCTCAACTGTTCCTATAGAACAGAATCACAGAATCGGAAGTGAAGAAAGTGCTCCTGTAGAGAAGGCCCAATATCAGAGATTGGTGGGAAAATTGATTTATCTATCACACACAAGACCTGACATTGCTTATGCAGTTAGTGTAGTGAGCCAATTTATGCATGATCCAAGAGAGAGACATATGCAAGCAGTTGATAAAATTCTCCAATACTTGAAGTCAAGTCCAGGAAAGGGGCTATTATTCAAAAAGGAAGACACATTGAATATGAAGATATATACTGATGCTGACTATGCAGGTTCTATTACTGATAGAAAATCTACTTCGGGGTATTGTGTATTTCTTGGAGATAGTTTGGTAACATGGAGAAGCAAAAAGCAAGATAGAGTGTCCCGTTCTAGTGCAGAAGCTGAATTTCGAGCCCTTGCTCAAGGAATGTGTGAAGGACTCTGGATGAAAATCATCTTGGATGATCTTAAAGTCAAAGTAGAGCACCCAGTGCAACTACACTGTGACAATAAGTCTGCTATGAGCATAGCCCATAATCCAGTACAGCATGACAGAACCAAACACATTGAAATTGACAGACACTTCATCAAAGATAATCTTGACAGAGGCTTTGTGATTACAACTCATGTTCCTACAGAACTTCAAATAGCAGATATCTTCACAAAAGGGCTTCCTCCGGGTAGATTTCAAGATCTTGTAGGCAAGTTGGGAATGATTGATATTCATTTACCAACTTGA 5253 0.4108 MIGVTNKEELIPVEEAILKLGKETGLKVSNNVREETLGMSQSQRNGKTRTKTHSRSSGETIDSDTTCRREVAHDGACEASEEGTTRRKQRLTAATTVDNGVNGRNDKVMTSPTIDEKDLEENAIGGKENNEVIGIGHKWQSHEKSSSKRSSMVVLLPFDVLLTSYDIALVDQDFLSQIPWQYAIIDEAQRLKNPSSGLDSAARSAPPPLSDHRRCHRRQSGSLIGQKGAPNTGDLRAGSRSSNGAATRRHAPPPSPARVTHAPPSGETHSPAPPQTGSPEPPESVPRGAATEGSPEPPDSVPWVVDLSLKFLPFFIGYGMSEEKSIPFGVPNDLPNIGSTSWLDGQNYLQWSQFILRILKSRSKLDHIHGGGPAPDDKHFSMWDREDSLIMTWMWQSMSPEVRKNYMFHSSAKEIWDDLQSTFSLKKNLAATYDIKNRIFNTKQDSLSVTEYHGILNGLWMELDQIQTIKMCKTDAAVLAEFMEGEKIFKFLQGLNHEYDPIRVQIFGREKLPPLSEVFFMVRGEETRRSVMLHGGISNTGSAMTTGKGVHKGTNAGGKTFEKGTNGDYCTYCKRSGHTKEICFKLHGKKNVLERIGNNKGPTKKWVNHTTSEREATNQSNPSQSNPPPPPPDLDMQTYKEKLERLEAMIESMSKPSGSCTLSIKGKICLNTVGHVSHGIWILDSGATDHMTPFSGNFDSYSKSNKEQIITVANGQGVPVCGSGNIFLDSSIVLKDVLHVPQLANSLISVQKFTKDLNCSVIFFPTYCVFQDLATGKTILTAKEQSGLYFLEFDNQSNTQILSQQATSETWAKSQIWLHHQRLGHPSFSLIKSLFPHLFTKESVESFNCDICQLSKHHRASYPISNKKSISPFDLIHSDVWGPVIDSISGAKWFVIFIDDCTRVTWTYLMKNKSEVFQIFVNFFRLVQTQFGKNIKKIRSDNGTEYVNHEFLKFLSHNGIVHELTCVNTPQQNGVAERKNRHLLEVTRALLFQMSVPKHYWGEAVLTATYLINRLPTRTLNGISPIESLLSFVPSSSLTTSLPSRVFGCVVFVHSHPPNRGKLDPRALKCVFIGYPSNKKGYKCYHPPSRRVFITMDVTFHETKSFYVSSPLQGEKALEVDELSFLSLPCLSLQDAQDLSNEATIVHSEQEEEDRFFGKKYARREQPTSTLEQEELSDPEVSIPEDINEEEVSITEDLPIALRKGRRSCAKYPISQYVCTNNLSDKHKSFIAAIDATEIPTSIQEAMKLEHWNQAMKEEMNALERNSTWEIVDKPRDKKTVGCRWIFTVKHKADGTIERYKARLVAKGYTQTYGIDYEETFAPVAKMNTVRVILALAAHFGWDLHQLDVKNAFLHGDLDEEVYMEIPPRFEVKNERNKVCLLKKALYGLKQSPRAWFGKFTKAMVSLGYRQSQGDHTLFIKHSSTGKLTLLLVYVDDMIIAGDDETEKLALKEKLAAQFEMKDLGKLKYFLGIEVAYSKNGIFISQRKYVLDLLKETGKLGCRTSTVPIEQNHRIGSEESAPVEKAQYQRLVGKLIYLSHTRPDIAYAVSVVSQFMHDPRERHMQAVDKILQYLKSSPGKGLLFKKEDTLNMKIYTDADYAGSITDRKSTSGYCVFLGDSLVTWRSKKQDRVSRSSAEAEFRALAQGMCEGLWMKIILDDLKVKVEHPVQLHCDNKSAMSIAHNPVQHDRTKHIEIDRHFIKDNLDRGFVITTHVPTELQIADIFTKGLPPGRFQDLVGKLGMIDIHLPT 1750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03708 1750 PANTHER GAG-POL-RELATED RETROTRANSPOSON 799 1748 - -
Vimu6g03708 1750 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 1266 1509 IPR013103 -
Vimu6g03708 1750 Pfam Integrase core domain 872 970 IPR001584 GO:0015074
Vimu6g03708 1750 ProSiteProfiles Integrase catalytic domain profile. 868 1033 IPR001584 GO:0015074
Vimu6g03708 1750 Gene3D - 865 1045 IPR036397 GO:0003676
Vimu6g03708 1750 MobiDBLite consensus disorder prediction 52 67 - -
Vimu6g03708 1750 Coils Coil 1246 1266 - -
Vimu6g03708 1750 SUPERFAMILY Ribonuclease H-like 872 1035 IPR012337 -
Vimu6g03708 1750 MobiDBLite consensus disorder prediction 595 636 - -
Vimu6g03708 1750 MobiDBLite consensus disorder prediction 31 47 - -
Vimu6g03708 1750 Gene3D - 124 214 IPR038718 -
Vimu6g03708 1750 SUPERFAMILY DNA/RNA polymerases 1265 1696 IPR043502 -
Vimu6g03708 1750 MobiDBLite consensus disorder prediction 31 67 - -
Vimu6g03708 1750 Pfam GAG-pre-integrase domain 787 857 IPR025724 -
Vimu6g03708 1750 Pfam Retrotransposon gag protein 405 497 IPR005162 -
Vimu6g03708 1750 CDD RNase_HI_RT_Ty1 1595 1731 - -
Vimu6g03708 1750 MobiDBLite consensus disorder prediction 193 299 - -
Vimu6g03708 1750 MobiDBLite consensus disorder prediction 1160 1180 - -
Vimu6g03708 1750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 205 IPR027417 -
Vimu6g03708 1750 MobiDBLite consensus disorder prediction 267 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03708 Vimu-Chr6 35124945 35132666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03708 1214 1703 Receptor kinase-like Gene Family AT4G23160 46.465 2.73e-148 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu6g03708 RVT_2 7.2e-77 CL0027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03708 - K12169 qsa:O6P43_029985 1298.49