Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03704 ATGATGCACCAGATGCAGTGGTCACTGATGATAACAACCGGGCTTGTTTTGGAGGGTGTAAGGGCAAGGCAGAAGCAGGATTCTTTGCTCATGGAGAAGCGGGTAATTGAACAAGATATGCAGCAAGCTAACACATCCCTGAATTTATATGATATTAAAGCTTCAAGAATTGAAGACCAGTTGAAGTTTTGTTCGGATCAGCTTCAAAGACTTGCAGAGGATAAGCTTCAATGTTCTGCCACTTCAGAAAATACACAAAGAAGGCTGTCTGATATTAGAAGACAAACTCAACAGATTAGGGATACAGTGGTCGAATTGCAATCAAAAATTGGTAGTAATAGGGTGACACGAATGGAGTTACGAGTAGAACTTGAGAAGGAAAGGTTTGCCAAGAAAAGAACTGAGGAGGATTTGGAGGTCGCTAGGAGAAAGTTTTCACGCCTTAAAGAACAGAATGAGGGGTCTTCAATAACTGAAAAGCTTCAACAAGAACTTGAAGAGTACAGGGAAATTATCAAGTGCAGTATCTGTCAAGATAGGGCAAAAGAGGCGGTAATTACAAAATGCTACCACTTGTTCTGCTTCTCATGTATCCAGAAAGTTGCTGGGAGTAGGCATCGGAAGTGTCCGCAGTGTGCTACAAGCTTTGGGGTTAATGATGTGAAGCCTGTTTATTTGTAA 681 0.4156 MMHQMQWSLMITTGLVLEGVRARQKQDSLLMEKRVIEQDMQQANTSLNLYDIKASRIEDQLKFCSDQLQRLAEDKLQCSATSENTQRRLSDIRRQTQQIRDTVVELQSKIGSNRVTRMELRVELEKERFAKKRTEEDLEVARRKFSRLKEQNEGSSITEKLQQELEEYREIIKCSICQDRAKEAVITKCYHLFCFSCIQKVAGSRHRKCPQCATSFGVNDVKPVYL 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03704 226 SUPERFAMILY RING/U-box 166 225 - -
Vimu6g03704 226 SMART ring_2 174 212 IPR001841 -
Vimu6g03704 226 FunFam E3 ubiquitin protein ligase 155 226 - -
Vimu6g03704 226 Coils Coil 124 151 - -
Vimu6g03704 226 ProSitePatterns Zinc finger RING-type signature. 189 198 IPR017907 -
Vimu6g03704 226 Pfam Zinc finger, C3HC4 type (RING finger) 174 212 IPR018957 GO:0046872
Vimu6g03704 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 226 IPR013083 -
Vimu6g03704 226 PANTHER RING FINGER PROTEIN-RELATED 15 226 IPR013956 GO:0004842|GO:0010390
Vimu6g03704 226 Coils Coil 54 74 - -
Vimu6g03704 226 CDD RING-HC_Bre1-like 166 224 - -
Vimu6g03704 226 ProSiteProfiles Zinc finger RING-type profile. 174 212 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03704 171 225 C3H Transcription Factor Family AT2G42030 39.286 2.97e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03704 K10696 - gmx:100790744 373.629