Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03703 ATGGAAAGTGATGCTGGGGAAAACTTGTTCAACACATTCTTCTCCTCCTCCACATCCATGACCATCTCCACCACCACCATCACATCATCATCTTCTTCTTCATCAGCATCATCTACCTCAAGCTCAAACTCATGCACCAAGCAGGACTCCCAAACCAGTCCTCCAGATGATTCAACAACAGCTCAGAATCAAAGCACCCCAAATAAGGAATGCAAGAAAAGACAAAGAAATGGTGATGATAACAAGCACCCCAGTTACAGGGGTGTGAGAATGAGAGCATGGGGCAAATGGGTGTCTGAGATACGTGAGCCTAGAAAGAAGTCGAGAATATGGCTTGGAACATACCCTACAGCAGAAATGGCAGCCAGAGCACACGATGTGGCAGCTTTAGCCATAAAGGGTCACTCGGCTTACCTCAATTTCCCCAATTTAGCTCAAGATCTTCCAAAGCCCATCACCACATCTCCCAAGGACATTCAAGCTGCAGCTGCAAAAGCAGCAACCACTTTCTTTGATCATGGCAAGCATTGTGAAGCAGAAAAGGATGAACAAAACCATGCAGAACAAGCTTCATCTTCAACTCTATGCATGGAGAATACTGAGGCTGAGCAAGTTCAAGCAGAAGAAGCTTCACCGTCAACTCTATCCGTGGACACTACTCAAGGGTCTTCAACTTCTCACTCTACTGCAGATGATGACACACTGTTTGACCTTCCAGATCTTTTCCCTGATGGAAACAATGGACTTTTTTTCTCTTATTCTTCTTCTTGGCGTTTATGTGCTGCTGATAGTGGATTAAGGCTTGAAGAGCAATTTTTGTGGGAGAATTACTAG 834 0.4484 MESDAGENLFNTFFSSSTSMTISTTTITSSSSSSSASSTSSSNSCTKQDSQTSPPDDSTTAQNQSTPNKECKKRQRNGDDNKHPSYRGVRMRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPNLAQDLPKPITTSPKDIQAAAAKAATTFFDHGKHCEAEKDEQNHAEQASSSTLCMENTEAEQVQAEEASPSTLSVDTTQGSSTSHSTADDDTLFDLPDLFPDGNNGLFFSYSSSWRLCAADSGLRLEEQFLWENY 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03703 277 MobiDBLite consensus disorder prediction 180 232 - -
Vimu6g03703 277 ProSiteProfiles AP2/ERF domain profile. 85 142 IPR001471 GO:0003700|GO:0006355
Vimu6g03703 277 SMART rav1_2 85 148 IPR001471 GO:0003700|GO:0006355
Vimu6g03703 277 PRINTS Ethylene responsive element binding protein signature 108 124 IPR001471 GO:0003700|GO:0006355
Vimu6g03703 277 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Vimu6g03703 277 Gene3D AP2/ERF domain 85 143 IPR036955 GO:0003700|GO:0006355
Vimu6g03703 277 Pfam AP2 domain 84 135 IPR001471 GO:0003700|GO:0006355
Vimu6g03703 277 MobiDBLite consensus disorder prediction 69 87 - -
Vimu6g03703 277 CDD AP2 84 144 IPR001471 GO:0003700|GO:0006355
Vimu6g03703 277 MobiDBLite consensus disorder prediction 22 68 - -
Vimu6g03703 277 MobiDBLite consensus disorder prediction 22 87 - -
Vimu6g03703 277 SUPERFAMILY DNA-binding domain 85 143 IPR016177 GO:0003677
Vimu6g03703 277 MobiDBLite consensus disorder prediction 188 232 - -
Vimu6g03703 277 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 51 241 - -
Vimu6g03703 277 FunFam Ethylene-responsive transcription factor 2 84 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03703 Vimu-Chr6 35022336 35023710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03703 72 273 AP2-EREBP Transcription Factor Family AT2G44940 53.555 2.37e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu6g03703 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03703 - - pvu:PHAVU_008G141000g 427.172