Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03691 ATGACTTCAACACTTAACCAAGGAGATGACTCTCATGGGGGCAGTGCTTCAAAGCCAATCCACTTTTTCAGGATCATCCTCTCCAACAACCTTCAGCATGGAAAGCTAAAGCTTCCAGCAAAGTTTGTGAGCAAATATGGAAATCACTTGCCCAGCACAATGTTTCTTAAGCTTCCAAACGATGCAGAATGGGAAGTAAAATTGGAGAAAAGTGATGGGAGTGTTTGGTTTCAGCAAGGTTGGAAAGAGTTTGCAGAGTATCACTCTCTAGCCCATGGACACCTCTTGGTTTTCAGATACAATGGAACATCACATTTCCATGTACTCATCTGTGATATGAGTTGCATGGAAATAGACTACCCTGTCAACAAAGCAAATCACAAAAGGTTTACAATTAAGAGTGAAAACATTCAACCACCTAAGACAATGAAAACAACTGAGAATAAGAAAAGGTGTTGTTCCAATTTGCAAGACACTGCATCCGATGAAAAAGTCAGAGACCACAAAGGTATGTTGAAGAATCTAAATGAAGGGAAAAGACACATGGAAGCTCTTGAGAATACTTCCTTCATGGTGATAATCAAACAAAGCATTTTTACTAATGGGTACATGTATCTGCCAAGAGTCGCATTGAGGAGCTACGTCAAACGTCGTGATGAACAATTTGTTACTCTTGTTGTTGGGGACAGAAGATGGAGGGTTAAATTGGTTCGTTATAGAAATTATTCAGCTTACTTGACTAATTTGTTAGATTTTGCAAGGGAGAATAATTTGAAAGAAGGAGATGCTTGCTTTTTCAAACTCATGAACATGGGTGATGACGTGGTGATGAAGGTTTCCTTTGTAGCCAGAAACTCCTCTCTAAGAGGACAATAG 876 0.395 MTSTLNQGDDSHGGSASKPIHFFRIILSNNLQHGKLKLPAKFVSKYGNHLPSTMFLKLPNDAEWEVKLEKSDGSVWFQQGWKEFAEYHSLAHGHLLVFRYNGTSHFHVLICDMSCMEIDYPVNKANHKRFTIKSENIQPPKTMKTTENKKRCCSNLQDTASDEKVRDHKGMLKNLNEGKRHMEALENTSFMVIIKQSIFTNGYMYLPRVALRSYVKRRDEQFVTLVVGDRRWRVKLVRYRNYSAYLTNLLDFARENNLKEGDACFFKLMNMGDDVVMKVSFVARNSSLRGQ 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03691 291 CDD B3_DNA 189 281 IPR003340 GO:0003677
Vimu6g03691 291 PANTHER B3 DOMAIN-CONTAINING 14 271 - -
Vimu6g03691 291 SMART B3_2 190 282 IPR003340 GO:0003677
Vimu6g03691 291 SMART B3_2 22 114 IPR003340 GO:0003677
Vimu6g03691 291 Pfam B3 DNA binding domain 26 112 IPR003340 GO:0003677
Vimu6g03691 291 Pfam B3 DNA binding domain 192 279 IPR003340 GO:0003677
Vimu6g03691 291 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Vimu6g03691 291 Gene3D - 172 286 IPR015300 -
Vimu6g03691 291 SUPERFAMILY DNA-binding pseudobarrel domain 17 114 IPR015300 -
Vimu6g03691 291 Gene3D - 15 115 IPR015300 -
Vimu6g03691 291 SUPERFAMILY DNA-binding pseudobarrel domain 186 273 IPR015300 -
Vimu6g03691 291 CDD B3_DNA 21 112 IPR003340 GO:0003677
Vimu6g03691 291 ProSiteProfiles B3 DNA-binding domain profile. 189 285 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03691 Vimu-Chr6 34849730 34851069 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03691 22 291 B3 DNA Binding Superfamily AT3G18990 26.361 2.95e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu6g03691 B3 2.2e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03691 - - vum:124844820 466.077