Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03687 ATGTCCATCTTGCCCTCACAAACCCAAGCGTCATCTTCGTCTTCTTCATCAGCGCCGTCTCCTAACCCTAATCCCCAACATGGCATCGGAAGCCCTCTTCCTCAACAACCCTTCCCTTACCTCTCACCCCCACTCCACCACGCGCTCGGATCTCTCCAGATCTCCGGTATCGCAGGTTCTTCGACTCAAGCTACTGAAGATTCTGGTGGATCTTCCGAAAAGGTGACAGAATTAGGGTCTCCAAGTGGAGTGACGGTTTCACCTCAGCAAAACTCTAGAACACGTTCTAGGATTCACGGAGGAAGACGGGCAGGAATGGTTTCTTCTCATAGAAACCAACAAGCTCCTGGGTCCGTGGGTTCTCATGGAAGTACCCCTTTGGCAGGGAGGAAAGCTCAGACTGTGAACGGAAATTACTTGCTGAATTTTCAATATGACCCAATATCCCGTTCTCAACCCCGGGGTCCCCCTCCCCCCCCTGCAGCAAGAAGGCATTGGAAGAGGAAGCCATACAATAAAGATTTGTTTTTGCAGGCAAATTACAAGTTCATGGTGTTAGATTCGGGAAATTATTCTCCTGAGTCGATGGATCCTGATAAAATGTTGCAGTGGGAAGACATTATATGTGTGACATATTTGACCCCCTTCTCAGTTCAGTGTCCAATTTGTTTGGAGTATCCACTGTGTCCGCAGATAACCTCATGTGGACATATTTTCTGTTTCCCATGTATTCTACAGTACTTAATGATGGGTGAAGAGGATCACAAAGGTGATATCTGGAAAAGGTGTCCTCTGTGCTTTGTCATGACATCTGCCAAGGATTTATATACAGTTCACATCACAAATGTCAAACAGTATCAAGTAGGAGAAAATGTTGAGTTCACCTTTTTAACTCGGAAAAAGGACTCATTTACTCTGACAAGTAAAAATAAACAAGAGACAAATATCATATCATTTGGTAATGGACACTTCTGCGATCCCTTTTCAAAGTTTACTCTTACATCAGATGTAGATCTCTCAGTGAGGCGTTCAATATCTGATCTTGATGGTTGGCTGGCCAGAGCAGATTCTGGTCTTGTTGATGACCTGGAGAAGCTTCCTTATGTTTGTGCTGCAATGCAGCAACTGGAACAGAGGAAGTGGCATTGGAATGAGCAAAAGTCTCATGACAGTGAAAATTCTAAGCCCATTGATCATGCACATCAGATACAATCCATGGTCGCAAATTCTATGGATACTGATGATGAAAACTGTTCTAATGGGTCAAAAACTTCCTCTACTGATTACAGTGACCAAATTAAGGTTTCGATTCTGGAAAAGTCAACTGCTGGAGCCTGTTCTAACCAAACTTTGAATGTGGAGAAAGAATTAATAGAGCAACAAATGAATTTATCTTCTTCATATGAGGAGAAGTATAGTATTCAAAGGCCAGCAGATGATGGTGTTATTGAAGAAATGAAGGGAAATGATTCATATAGTTTTTACCAGGCTGCTGATGGTCAGCATCTAATTCTTCATCCGTTGAACATGAAGTGTTTGCTCCACCATTTTGGGAGCTATGATATGCTTCCACACAGAATAAATGGAAGGATTCTACAATTGGAGACAGTTACTCAGTCTGAGGCCATGAGGAGGAGATATCGATTCCTAAGTCATTTTCCGTTAACCACAACATTTCAGCTTTGTGAAGTTGATTTGAGTGAGTTGTTACCTCCTGAAGCACTGGCTCCATTTATGGATGAAATAAAGAAACGTGCAAATCATAGAAAACAACTTGCAAAAAAGGAACGGCAGGAAAAAATAAGGGCTGAAGCTACAGGTTCTTATACGCTTCCCATATCATTTAGTAGTCAGCTTACATCTCATGATGATCCTCCAGCATTCTCCATGGATGACTTTGAAGCTCTAGGAAATTCAACTGTTTCCTCAAGTCCTCCCGTAGCTGGGGAGAGAAAATCGTTCTCGAATGTCACGAGACTTGGGTTTGCTGCTGCTCATGATTCTCCATCCTTGCAAATTCAAGAAACTAGTGGTCTACACAATAACAATACGACAATTGATTCTTCTGCCCCAACAGGTTCGAGAAACGGGGAGACACAGTCATACTCCAATGTTATATCAAGAGCAGAATCAAATATAAGCTCGAATGCACCAAAGACTAATGAGTTGGGGAAGAAAGGTAAAAAGCAAAATCGAGTTCTTCTATCAACAGCTGGAGGTAGACGTTATTGA 2232 0.4247 MSILPSQTQASSSSSSSAPSPNPNPQHGIGSPLPQQPFPYLSPPLHHALGSLQISGIAGSSTQATEDSGGSSEKVTELGSPSGVTVSPQQNSRTRSRIHGGRRAGMVSSHRNQQAPGSVGSHGSTPLAGRKAQTVNGNYLLNFQYDPISRSQPRGPPPPPAARRHWKRKPYNKDLFLQANYKFMVLDSGNYSPESMDPDKMLQWEDIICVTYLTPFSVQCPICLEYPLCPQITSCGHIFCFPCILQYLMMGEEDHKGDIWKRCPLCFVMTSAKDLYTVHITNVKQYQVGENVEFTFLTRKKDSFTLTSKNKQETNIISFGNGHFCDPFSKFTLTSDVDLSVRRSISDLDGWLARADSGLVDDLEKLPYVCAAMQQLEQRKWHWNEQKSHDSENSKPIDHAHQIQSMVANSMDTDDENCSNGSKTSSTDYSDQIKVSILEKSTAGACSNQTLNVEKELIEQQMNLSSSYEEKYSIQRPADDGVIEEMKGNDSYSFYQAADGQHLILHPLNMKCLLHHFGSYDMLPHRINGRILQLETVTQSEAMRRRYRFLSHFPLTTTFQLCEVDLSELLPPEALAPFMDEIKKRANHRKQLAKKERQEKIRAEATGSYTLPISFSSQLTSHDDPPAFSMDDFEALGNSTVSSSPPVAGERKSFSNVTRLGFAAAHDSPSLQIQETSGLHNNNTTIDSSAPTGSRNGETQSYSNVISRAESNISSNAPKTNELGKKGKKQNRVLLSTAGGRRY 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03687 743 MobiDBLite consensus disorder prediction 25 41 - -
Vimu6g03687 743 FunFam RING finger protein 10 213 281 - -
Vimu6g03687 743 SMART ring_2 220 266 IPR001841 -
Vimu6g03687 743 PANTHER RING FINGER 10 FAMILY MEMBER 63 743 IPR039739 -
Vimu6g03687 743 MobiDBLite consensus disorder prediction 1 130 - -
Vimu6g03687 743 SUPERFAMILY RING/U-box 219 270 - -
Vimu6g03687 743 Pfam Zinc finger, C3HC4 type (RING finger) 220 266 IPR018957 GO:0046872
Vimu6g03687 743 ProSitePatterns Zinc finger RING-type signature. 235 244 IPR017907 -
Vimu6g03687 743 MobiDBLite consensus disorder prediction 1 24 - -
Vimu6g03687 743 MobiDBLite consensus disorder prediction 54 95 - -
Vimu6g03687 743 MobiDBLite consensus disorder prediction 675 721 - -
Vimu6g03687 743 CDD RING-HC_RNF10 218 275 - -
Vimu6g03687 743 MobiDBLite consensus disorder prediction 675 743 - -
Vimu6g03687 743 ProSiteProfiles Zinc finger RING-type profile. 220 266 IPR001841 -
Vimu6g03687 743 MobiDBLite consensus disorder prediction 147 166 - -
Vimu6g03687 743 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 213 302 IPR013083 -
Vimu6g03687 743 MobiDBLite consensus disorder prediction 107 130 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03687 117 694 C3H Transcription Factor Family AT3G26730 54.362 0.0 611
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03687 K26979 - gmx:100798764 1193.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03687 6 34722262 34728719 Vimu6g03687 6 34722262 34728719 ECH