Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03680 ATGATGGAGGGCTATGCTCTTCCACCACCACCCGGTGAAGAGGACGCGCCACCACCGTCATGGGGTAGGCCTAATTCACAGGAAGAGGACATTGCCATTGCCTTGGGTGCCCCTCTTTCCTTTAAATCCATGCTTCAACAACAGCCTCAACAACCACAACTACAACCACAACCACAGCCACCACCACAACTTGACTCTTATTTCAACTTCAACTCTGCTATTCCCATTCCCTTTCTTCCTACTATGGAATCTTTTCCCCCTCTGGACCCCTTCTCACCTTCACTTTCATCGTCTCCTTTCTTCAACAACAGCAACAACACCAGCATGCCTTTTGACCCGGGCTTTGACTTGGGCCTCGACAACGGCCTTCACTCTTCATGCCCCCCTCTTTTCTCCCAGGTTCAGCCGGCCTTCGAGTTTGGAGAACTGGAAGCTCTTACTGCTGCACCTGGGCATGTGCCCTTTATGGAGGGACCCAAGGGGGACAACCCTCTTGAGAGGGTGCAGCCCACCCTTTACAGGAAGAGGAGGGGAACGGCAGAGATTCCCGGGCTGGAGACGGTGAGGAGGAAGGGGAGGAAGTGGGAGGAGGGGGAGGCTGAGGAAGGGAGCAGTGCTGACGTGGATGGTTCTGGGTTGAATTATGAGTCTGATGAGAATGATAATGGAAATAATGGTTTGAAGAGAAGTGAGAATGGTGAAGATCACAAGGGGAAGAGAAAGGGGTTGCCTGCCAAAAATCTCATGGCGGAGAGGCGCCGCCGGAAGAAGCTCAATGATCGGTTGTACATGCTCAGGTCTGTTGTGCCCAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCAATTGACTACCTGAAGGAGTTGCTGCAGCGGATCAATGATCTCCACAACGAGCTGGAGACAACTCCAGCGAGCTCGTCGCTGCCACCTTCTACTTCTACAAGCTTTCAGCCTCTAACACCCACCCTGCCAACTCTTCCCTGCAGGGTCAAGGAGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAATCAAGCTGCAAAGGTTGAAGTTAGAGCAAGAGAAGGGAGAGCTGTGAATATTCACATGTTTTGCACCCGCCGACCAGGCCTTTTGCTGTCTACCATGAAGGCTTTGGACAACCTTGGATTGGATGTACAGCAGGCTGTTATAAGCTGTTTCAACGGCTTTGCTTTGGATGTGTTTAAAGCTGAGCAATGCAGAGAAGGGCAGGATGTGCTACCTGAGCAAATCAAAGCAGTGCTCTTGGATTCAGCAGGGTTTCATGTGCTTCTTCTTCTTATTCTCCTCTGTAGAGGCCTTCCTGTTTTGGCCATGATCAAATAG 1356 0.5118 MMEGYALPPPPGEEDAPPPSWGRPNSQEEDIAIALGAPLSFKSMLQQQPQQPQLQPQPQPPPQLDSYFNFNSAIPIPFLPTMESFPPLDPFSPSLSSSPFFNNSNNTSMPFDPGFDLGLDNGLHSSCPPLFSQVQPAFEFGELEALTAAPGHVPFMEGPKGDNPLERVQPTLYRKRRGTAEIPGLETVRRKGRKWEEGEAEEGSSADVDGSGLNYESDENDNGNNGLKRSENGEDHKGKRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELETTPASSSLPPSTSTSFQPLTPTLPTLPCRVKEELYPGTLPSPKNQAAKVEVRAREGRAVNIHMFCTRRPGLLLSTMKALDNLGLDVQQAVISCFNGFALDVFKAEQCREGQDVLPEQIKAVLLDSAGFHVLLLLILLCRGLPVLAMIK 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03680 451 MobiDBLite consensus disorder prediction 176 201 - -
Vimu6g03680 451 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 99 431 - -
Vimu6g03680 451 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 242 291 IPR011598 GO:0046983
Vimu6g03680 451 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 245 314 IPR036638 GO:0046983
Vimu6g03680 451 FunFam BHLH transcription factor 238 306 - -
Vimu6g03680 451 MobiDBLite consensus disorder prediction 222 252 - -
Vimu6g03680 451 Gene3D - 234 306 IPR036638 GO:0046983
Vimu6g03680 451 CDD ACT_UUR-ACR-like 364 405 - -
Vimu6g03680 451 MobiDBLite consensus disorder prediction 176 252 - -
Vimu6g03680 451 MobiDBLite consensus disorder prediction 303 325 - -
Vimu6g03680 451 Pfam Helix-loop-helix DNA-binding domain 249 291 IPR011598 GO:0046983
Vimu6g03680 451 CDD bHLH_AtAMS_like 245 303 - -
Vimu6g03680 451 SMART finulus 248 297 IPR011598 GO:0046983
Vimu6g03680 451 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03680 Vimu-Chr6 34675245 34678104 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03680 168 408 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 69.388 7.46e-100 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu6g03680 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03680 - - vun:114162308 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03680 6 34675245 34678104 Vimu6g03680 6 34675245 34678104 ECH