Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03662 ATGTCTATCACCTTCCTTGTTGACCTCTATCAGAGTTATAGACCCTTCATACTTTATGTGACTTGTATTTTGAGGACCTTAGTTTGTCCAGTATCATACGGTAGGCTCATTGCTAAATTATTGCATGAGGTTCGTGTTTCTGAGTATAACAATATTCGTAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGCTTAGCAGTCCGTGATCTTTCCAACTTGGTTAAGCCAGAGGACATTATTACTTCAGAAAATTTAACTACCCTCCTTGCAATTGTTTCCAAGTATTCACAGAAGGACTGGCTTTCAAGCTACGAAACATTGACAAATTATGTGGTCCCCAGGTCTTCTAAGAAGTTGTACGAGGACAACGAATATGCTCTGTATACTGTAACACTCTTTAGTCGAGTTGCAGATAATTTTAGAACTAGTGCACGGGAAAAAGGGTTCCAAATTCGTGACTTTGAATACAGTCAAGAAACACACGAGAACCGAAAGCAAGAGTTAGATAAATTGGTACAAGATCAGGAAAGACTGAAGGCTTCTCTGTTGCAATGGTGCTTTACCAGTTATGGAGAGGCATGCGTTTTGGCTCCGTCTGTGAAATCTGAGAAGAAAGTGCGCTCTATCCTTGAAGCGTTAAGTGATAGTACAAACAGGCAAGTGGCTTATCAATGGCTATGTGCATACTGGAAGATTGAGGATGACGTAGGTACTGGGATGGTTGGCCTTGCAGGTGATTCCGATGCTCACCCTTATGTTTCTTTCACTATCAATCTTGCTTGA 789 0.4106 MSITFLVDLYQSYRPFILYVTCILRTLVCPVSYGRLIAKLLHEVRVSEYNNIRSQLNAINRKQTGSLAVRDLSNLVKPEDIITSENLTTLLAIVSKYSQKDWLSSYETLTNYVVPRSSKKLYEDNEYALYTVTLFSRVADNFRTSAREKGFQIRDFEYSQETHENRKQELDKLVQDQERLKASLLQWCFTSYGEACVLAPSVKSEKKVRSILEALSDSTNRQVAYQWLCAYWKIEDDVGTGMVGLAGDSDAHPYVSFTINLA 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03662 262 CDD V-ATPase_C 42 259 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vimu6g03662 262 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 195 261 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vimu6g03662 262 Pfam V-ATPase subunit C 45 199 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vimu6g03662 262 Coils Coil 160 183 - -
Vimu6g03662 262 Gene3D - 46 173 - -
Vimu6g03662 262 SUPERFAMILY Vacuolar ATP synthase subunit C 43 261 IPR036132 GO:0015078|GO:0033180|GO:1902600
Vimu6g03662 262 FunFam V-type proton ATPase subunit C 69 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03662 Vimu-Chr6 34398317 34401415 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03662 43 262 Primary Pumps ATPases(2) AT1G12840 68.548 8.03e-114 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03662 K02148 - gmx:100813963 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03662 6 34398317 34401415 Vimu6g03662 6 34398317 34401415 ECH