Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03661 ATGGCAAATTTGATGAAGATTGGACGTGGACCAAGCCTAAAAAGTTGTGGAACCCTGAGTGAGTGTTGGGATGTACCTGAGTATGTGATTGATGAGCATGAGAGTATTGAGCCTTCCTTGTGTGGGGGTGAAGGTGTCTTCCTTGTCCTTGTGTGGCAGGATTACATTACTACTCGAATGTATTTGTATGGGGAATGTACAAATGAGACTATAGGAGCGACTACAATCGGTGTGGTAGGGTATAGGAGTGTGACTGATTCTTTTCACTGTGGTGTTTATGGTATGATGATTCTCATGGTGTTGTTCATTACTGGATTGTCGAACCTCTTTGTTACGTTGTTGGAGAAGAAATTTTTGAAGATCTGCTACCATGAAACACCATTGGCGAAAGATGGTCAGGCGTGGCAGAAGAAAGGAGAGAAACAATCGTTGGCAGTGATCGAAACTGGGGTGATAATAGGGATGGGATCATTCTTTCTCATGGGAAAAGAAAGTCAAAGAGAAACCATGGGGATGAGGTCATTCTGTCTCATGGAAGCTAGAGTGCACCACTACAAGGATAAATTGGAAACCAAGCAGAGGAAGGAAAGAAGGAAGGTAACAATGGCGAGTAGGTACTGGGCAGTGTCTCTTCCCGTCCACAACTCCGCATCTCAACTCTGGAACCAAATTCAAGAACGAATCTCCAAACATTCCTTCGACACTCCTCTCTACCGATTCAATATTCCTAACCTCCGCGTTGGAACCCTAGATTCTCTGCTCTCTCTCAGTGATGACCTCGCCAAGTCGAACAATTTCGTGGAAGGAGTGACGCACAAGATCAGGCGCCAGATTGAGGAGCTCCAAAGAGTTTCTGGTGTGGACAGTGGCGGCCTCACCGTTGACGGTGTCCCCGTCGATTCCTACTTGACTAGATTTGTTTGGGATGAAGCCAAGTACCCCACCATGTCGCCTTTGAAGGAGATCGTGGATGGTATTCACAGTCAAGTGGCAAAGATTGAGGATGATCTCAAGGTTTGTTAG 1023 0.4604 MANLMKIGRGPSLKSCGTLSECWDVPEYVIDEHESIEPSLCGGEGVFLVLVWQDYITTRMYLYGECTNETIGATTIGVVGYRSVTDSFHCGVYGMMILMVLFITGLSNLFVTLLEKKFLKICYHETPLAKDGQAWQKKGEKQSLAVIETGVIIGMGSFFLMGKESQRETMGMRSFCLMEARVHHYKDKLETKQRKERRKVTMASRYWAVSLPVHNSASQLWNQIQERISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLAKSNNFVEGVTHKIRRQIEELQRVSGVDSGGLTVDGVPVDSYLTRFVWDEAKYPTMSPLKEIVDGIHSQVAKIEDDLKVC 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03661 340 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 203 339 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vimu6g03661 340 SUPERFAMILY Vacuolar ATP synthase subunit C 201 339 IPR036132 GO:0015078|GO:0033180|GO:1902600
Vimu6g03661 340 Gene3D - 242 340 - -
Vimu6g03661 340 Pfam V-ATPase subunit C 206 338 IPR004907 GO:0033180|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03661 Vimu-Chr6 34388405 34393862 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03661 202 339 Primary Pumps ATPases(2) AT1G12840 83.333 1.72e-80 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03661 K02148 - gmx:100780187 261.151